FC929304

Overview
NameFC929304
Unique NameFC929304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9284 contig Ccv1_Contig9284:2..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929304 vs. ExPASy Swiss-Prot
Match: SYD_THEAC (Aspartyl-tRNA synthetase OS=Thermoplasma acidophilum GN=aspS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 44/161 (27.33%), Postives = 81/161 (50.31%), Query Frame = 3 
Query:   87 VASTPFERITYTXXXXXXXXXXKEGKHFENKVEWGIDLASEHERYLTEVKFQKPVIVYNYPKGIKAFY-MRLNDDLKTVAAMDVLVPKVGELIGGSQREERYDVIKSRIEDMGLPLEPYEWYLDLRRFGTVKHSGFGLGFERMILFATGIDNIRDVIPFPR 566
            V  TPF RITY           K+G  F     +G D + +  R +   +F     +  +P  ++ FY M  ++D +   + D+   ++ E+  G+QR     ++  R  +  L ++ +++Y+D  ++G   H+G+GLG ER+ +   G++NIR+   FPR
Sbjct:  270 VPETPFPRITYEQCIDLLQ---KDGIDFT----FGDDFSPDQLRTIGS-RFSGFYFITEWPSSVRPFYTMPKSEDPRLTNSFDLQYREI-EVTSGAQRVHDPKMLIQRFNEKKLDVKSFQFYVDAFKYGMPPHAGWGLGLERLTMILLGLNNIRETTLFPR 421
The following BLAST results are available for this feature:
BLAST of FC929304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
SYD_THEAC9.462e-1127.33Aspartyl-tRNA synthetase OS=Thermoplasma acidophil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2AH02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929304 ID=FC929304; Name=FC929304; organism=Citrus clementina; type=EST; length=749bp
GTGACTGGTTACTTGACCATTGCTTTGACGACATGGAGTTTATGGCTAAA
AATTATGATAAAAGTTGCATTAACCGTCTAAGAATGGTTGCTTCAACTCC
CTTTGAACGCATAACATACACTGAAGCAGTAGAGCTACTAGAGGTTGCTG
TGAAGGAGGGGAAACATTTTGAGAATAAAGTGGAGTGGGGGATTGATTTG
GCATCTGAGCATGAAAGATACTTAACTGAGGTCAAATTTCAGAAGCCTGT
CATTGTGTACAACTATCCAAAAGGAATCAAAGCATTTTACATGAGGCTCA
ATGATGACTTGAAGACTGTGGCAGCTATGGATGTCCTTGTACCTAAGGTA
GGAGAGTTAATTGGTGGGAGCCAAAGGGAAGAGCGTTATGATGTAATCAA
GAGCAGAATAGAGGACATGGGACTCCCTCTTGAACCATACGAGTGGTACC
TTGACCTGCGGCGCTTTGGGACAGTGAAACATAGTGGGTTTGGCTTAGGC
TTTGAACGGATGATTCTTTTTGCCACAGGCATCGACAACATTAGAGATGT
TATCCCCTTCCCAAGATATCCCGGAAGAGCAGATCTCTAATCTTGAATTT
GCAAACATGCCTTTTTGAAAAATCACTAGTTATTACATCTTTTGCTGATT
CCAAACAATGTTAAACCAGGAAACCATAACATTGAAATTTATGTTTGCCA
TATTCTTAATGATAGAGATATTTTCTGGATTTGTCTTCTGNCAGCGTTT
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