FC929318

Overview
NameFC929318
Unique NameFC929318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15007 contig Ccv1_Contig15007:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKB1A_MOUSE (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Mus musculus GN=Fkbp1a PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  174 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELV 434
            +G    VHY G L DG  FDSS +R  P +F LG   VI+GW++G+  M VG++ KL I +   YGA G P  IP  ATL+FD EL+
Sbjct:   19 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISSDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKB1A_RABIT (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Oryctolagus cuniculus GN=FKBP1A PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  174 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELV 434
            +G    VHY G L DG  FDSS +R  P +F LG   VI+GW++G+  M VG++ KL I     YGA G P  IP  ATL+FD EL+
Sbjct:   19 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKB1A_HUMAN (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo sapiens GN=FKBP1A PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  174 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELV 434
            +G    VHY G L DG  FDSS +R  P +F LG   VI+GW++G+  M VG++ KL I     YGA G P  IP  ATL+FD EL+
Sbjct:   19 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP4_ASPFU (FK506-binding protein 4 OS=Aspergillus fumigatus GN=fpr4 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   93 SANKSGDVTELQIGVKYKPKTCDIQAHK---------GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 440
            S  K G+ T   +GVK + K   I   K         G+ + + Y GKL DG VFD++ ++G P  F+LG G VIKGWD G+ GM VG +R++ IP  L YG + + P IP  + LIFD +L+ +
Sbjct:  367 SGQKPGETTTGTLGVK-EVKGVKIDDKKLGKGPAAKAGNTVAMRYIGKLEDGKVFDAN-KKGKPFTFKLGKGEVIKGWDIGIAGMAVGGERRITIPPHLAYGKK-ALPGIPANSKLIFDVKLLEI 488          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKB1A_RAT (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Rattus norvegicus GN=Fkbp1a PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  174 KGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELV 434
            +G    VHY G L DG  FDSS +R  P +F LG   VI+GW++G+  M VG++ KL I     YGA G P  IP  ATL+FD EL+
Sbjct:   19 RGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFTLGKQEVIRGWEEGVAQMSVGQRAKLIISPDYAYGATGHPGIIPPHATLVFDVELL 105          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP5_CERAE (FK506-binding protein 5 OS=Cercopithecus aethiops GN=FKBP5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  177 GDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVNGK 449
            GDK+ VHY+GKL++G  F+SS +R +P  F LG   VIK WD G+  M  GE   L    +  YG+ GS P IP  ATL F+ EL+   G+
Sbjct:   50 GDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPSNATLFFEIELLDFKGE 140          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP3_CANGA (FK506-binding protein 3 OS=Candida glabrata GN=FPR3 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  168 AHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTV 440
            A KGD++ + Y GKL +G VFD +   G P  F+LG G VIKGWD G+ GM VG +R++ IPA   YG Q + P IP  + L FD +LV++
Sbjct:  348 AKKGDRVGMRYIGKLKNGKVFDKNTS-GKPFVFKLGRGEVIKGWDVGVAGMSVGSERRIIIPAPYAYGKQ-ALPGIPANSELTFDVKLVSI 436          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP4_ARATH (Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic OS=Arabidopsis thaliana GN=FKBP23I PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  156 CDIQAHKGDK------IKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLG------MCVGEKRKLKIPAKLGYGAQ-----GSPPTIPGGATLIFDTELVTV 440
            CD+    GD+      + +HY  +  DGT+FDSS++R  P+   +G G VI+G DQG+LG      M VG KRKL+IP KL YG +          IPG ATL++D   V +
Sbjct:   99 CDLDVGFGDEAPRGVLVNIHYTARFADGTLFDSSYKRARPLTMRIGVGKVIRGLDQGILGGEGVPPMRVGGKRKLQIPPKLAYGPEPAGCFSGDCNIPGNATLLYDINFVEI 210          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKB39_DROME (39 kDa FK506-binding nuclear protein OS=Drosophila melanogaster GN=FK506-bp1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  165 QAHKGDKIKVHYRGKLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGSPPTIPGGATLIFDTELVTVN 443
            +A +G ++ V+Y G+L        S  +G P +F LG G VIKGWD G+ GM VG KR +  P  + YGA+G+PP I   +TL+F+ EL  V+
Sbjct:  265 EAKQGKRVSVYYIGRLQSNNKTFDSLLKGKPFKFALGGGEVIKGWDVGVAGMKVGGKRVITCPPHMAYGARGAPPKIGPNSTLVFEVELKAVH 357          
BLAST of FC929318 vs. ExPASy Swiss-Prot
Match: FKBP_STRCH (FK506-binding protein OS=Streptomyces chrysomallus GN=fkbP PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.600e-16
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  168 AHKGDKIKVHYRG-KLTDGTVFDSSFERGDPIEFELGSGHVIKGWDQGLLGMCVGEKRKLKIPAKLGYGAQGS-PPTIPGGATLIFDTELVTV 440
            A  G  + VHY G   + G  FD+S+ RG P++F+LG+G VI GWDQG+ GM VG +R+L IPA L YG +G+    I  G TLIF  +LV V
Sbjct:   32 AQAGQTVSVHYVGVAFSTGEEFDASWNRGTPLQFQLGAGQVISGWDQGVQGMKVGGRRELIIPAHLAYGDRGAGGGKIAPGETLIFVCDLVAV 124          
The following BLAST results are available for this feature:
BLAST of FC929318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
FKB1A_MOUSE1.474e-1648.28Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Mus ... [more]
FKB1A_RABIT1.925e-1648.28Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Oryc... [more]
FKB1A_HUMAN1.925e-1648.28Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Homo... [more]
FKBP4_ASPFU2.514e-1640.80FK506-binding protein 4 OS=Aspergillus fumigatus G... [more]
FKB1A_RAT2.514e-1648.28Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Ratt... [more]
FKBP5_CERAE3.283e-1646.15FK506-binding protein 5 OS=Cercopithecus aethiops ... [more]
FKBP3_CANGA3.283e-1648.35FK506-binding protein 3 OS=Candida glabrata GN=FPR... [more]
FKBP4_ARATH4.288e-1641.07Probable FKBP-type peptidyl-prolyl cis-trans isome... [more]
FKB39_DROME4.288e-1643.0139 kDa FK506-binding nuclear protein OS=Drosophila... [more]
FKBP_STRCH5.600e-1649.46FK506-binding protein OS=Streptomyces chrysomallus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3DF09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929318 ID=FC929318; Name=FC929318; organism=Citrus clementina; type=EST; length=740bp
GACAAACAGAGAGAATTGTGAAGATGAGTTTCAACTCAGTATTGAATATC
GCCGCTGCAATTTCGTTCCTTTTGGTTCTTTCGACGTTAGTTTCTGCTAA
CAAGTCAGGCGATGTAACAGAGTTACAGATTGGCGTAAAGTACAAGCCAA
AAACCTGTGACATTCAGGCTCACAAAGGTGATAAAATCAAAGTACATTAC
CGGGGAAAACTGACTGATGGAACTGTTTTTGATTCCAGTTTTGAAAGAGG
TGATCCCATTGAATTTGAGCTTGGCAGCGGTCATGTAATCAAAGGATGGG
ACCAAGGACTTTTGGGAATGTGCGTCGGTGAGAAGCGAAAGTTGAAAATT
CCTGCAAAGCTTGGTTATGGGGCCCAGGGTTCTCCCCCTACCATCCCAGG
TGGAGCAACATTGATCTTTGACACCGAGCTTGTAACAGTAAATGGGAAAC
CAGCAAGCGGAGAGAAAACTGAAGATGAGCTATGATTACCTCTCGATTGA
GCAGATTTACCTAAGTCATTCCTGTTGCTTTTAATGTATCGGCATAAACC
AGGTTTCATAGGCCAGAATAATTTATCTATTTAGTGACCTACAGCTGAAC
AATTTTTGTTGTTTGGATCAGAAGAAATCTTTTTAAGGGGACAAAATATT
AATCTCTGAATATTCGGAAGGTTGGTTGCCTCGCTCTTAAGTGATGCGAA
CATAGCATTATTAGATTTTTCGCAAAAAAAAAAAAAAAAA
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