FC929360

Overview
NameFC929360
Unique NameFC929360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10210 contig Ccv1_Contig10210:152..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.830e-24
Identity = 76/233 (32.62%), Postives = 113/233 (48.50%), Query Frame = 1
Query:   73 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S       EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGS 216          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPZ_RHOPA (Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.830e-24
Identity = 67/198 (33.84%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGY-STGVG------------LAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAI 765
            G+G++G++ AFG  +  + Y    ISG H+NPAVT GL    +  + +   Y++AQ LGAI+   L+      Y    G    +LA G+ S G G               E++ T + ++ +  +T  K  A        APL IG A+ M+HL +IP+T T +NPARS G A ++    A    WLFWV P +G  +
Sbjct:   34 GIGLVGVSLAFGLSVVTMAYAIGHISGCHLNPAVTLGLAAGGRFPVKQIAPYIIAQVLGAIAAAALL------YLIASGAAGFDLAKGFASNGYGAHSPGQYNLVACFVMEVVMTMMFLFVIMGSTHGKAPAG------FAPLAIGLALVMIHLVSIPVTNTSVNPARSTGPA-LFVGGWAIGQLWLFWVAPLLGGVL 218          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.002e-24
Identity = 83/228 (36.40%), Postives = 114/228 (50.00%), Query Frame = 1
Query:   97 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVK--AFQKSYYTR-YGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            +A +AEFIA            I +   T    N       G++ IA A    +FV V   A  SGGH+NPAVTFGL +   ++++  + Y VAQ LGA     L++     K+  T    GG  EL        G+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV       +   W++WVGP IG  +A
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAFGQLT----NGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELE-------GVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---AAADFAGNWVYWVGPLIGGGLA 228          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.002e-24
Identity = 61/182 (33.52%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  229 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG--GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            IA+ FG  +  +      +SG HINPAVT G  +  ++S+++A  Y++ QC+GAI+G  ++K          GG  G +      +    +  E + TF+LV+ V + +DP R      +   APL +G A+   HL  I ++G  +NPARS G AV+      W   W++WVGP  G  +A
Sbjct:   52 IAFTFGLTVATIAQGLGHLSGCHINPAVTLGFLIVGEISILKAAFYIIVQCVGAIAGAAVIKVALDGV---AGGDLGVSSFDPSLNCAQAVLIEALITFILVFVVKAVSDPGR----QDIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQG---VWTYHWVYWVGPIAGGLLA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  220 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            +L +A A    +F  V  +  +SGGH+NPAV+FG  +  ++S++RAV Y +AQ LG+I    +++    +           ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA + G +++      W   W+FWVGP +GAA+AA
Sbjct:   58 LLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRP----SGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAA 231          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPZ_BORPA (Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 68/196 (34.69%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK---------SYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            G+G  G+A AFG  +  + Y    ISGGH NPAVT GL  + +        Y+VAQ +GAI     + +  +         S +   G G +     YS    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  WLFW+ P  GA + A
Sbjct:   36 GIGYAGVALAFGLTVLTMAYAVGHISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYG-DHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPZ_BORBR (Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 68/196 (34.69%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK---------SYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            G+G  G+A AFG  +  + Y    ISGGH NPAVT GL  + +        Y+VAQ +GAI     + +  +         S +   G G +     YS    L  EI+ +   V+ +  ATD +  A        AP+PIG A+ ++HL +IP+T T +NPARS G A ++    A +  WLFW+ P  GA + A
Sbjct:   36 GIGYAGVALAFGLTVLTMAYAVGHISGGHFNPAVTVGLAASGRFGWRDVPPYIVAQVVGAIVAAATLASIAQGVAGFDLVASKFAANGYG-DHSPGKYSMQAALICEIVLSAGFVFVILGATDKRAPAG------FAPIPIGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALEQLWLFWLAPIAGALVGA 223          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.532e-24
Identity = 71/185 (38.38%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  217 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            G++  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R ++Y VAQ LG+     L++       T   G       G S    L  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L      G  +NPA S G A++      W  QW++WVGP IG  +A
Sbjct:   57 GLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWEWGYQWVYWVGPLIGGGLA 229          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBPA (Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.532e-24
Identity = 68/195 (34.87%), Postives = 103/195 (52.82%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAI--SGVGLVKAFQKSYYTRYGGG--ANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            G+G+LG+A AFG  +  + +    ISG H+NPAVT GL+   +        Y++AQ +G +   G+  V A  ++ +   G G  AN   +     YS    L +EI+ T + +  +  ATD KR+ +       AP+ IG  + ++HL +IP+T T +NPARS  A  +Y  D A    WLFWV P +G  + A
Sbjct:   32 GIGLLGVALAFGLTVLTMAFAIGHISGCHLNPAVTVGLWAGGRFDTKDVAPYIIAQVIGGLIAGGILYVIATGQAGFDVVGSGFAANGYGEHSPGQYSMLAALVSEIVMTMMFLIVIMGATD-KRAPQG-----FAPIAIGLCLTLIHLISIPVTNTSVNPARST-AVAMYVGDWAVSQLWLFWVAPIVGGVLGA 219          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.455e-23
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG--LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            G+G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +      V Y++AQ  GAI       V A  K+     G  +N   +    GYS    L  EII T   +  +  +T  +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFW+ P +G A  A
Sbjct:   33 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPIVGGAAGA 218          
The following BLAST results are available for this feature:
BLAST of FC929360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
MIP_CAVPO3.830e-2432.62Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ_RHOPA3.830e-2433.84Aquaporin Z OS=Rhodopseudomonas palustris GN=aqpZ ... [more]
TIP22_MAIZE5.002e-2436.40Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
AQP_DROME5.002e-2433.52Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
TIPA_PHAVU6.533e-2435.68Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQPZ_BORPA6.533e-2434.69Aquaporin Z OS=Bordetella parapertussis GN=aqpZ PE... [more]
AQPZ_BORBR6.533e-2434.69Aquaporin Z OS=Bordetella bronchiseptica GN=aqpZ P... [more]
TIP11_MAIZE8.532e-2438.38Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
AQPZ_VIBPA8.532e-2434.87Aquaporin Z OS=Vibrio parahaemolyticus GN=aqpZ PE=... [more]
AQPZ2_AGRT51.455e-2336.27Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BB07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929360 ID=FC929360; Name=FC929360; organism=Citrus clementina; type=EST; length=812bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACA
ACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
ATTGGTGCAGCAATTGCAGCTTTCTACCCCAATTCATCTTGAGAGCTGGA
GCTGTCAAGGCT
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