FC929360

Overview
NameFC929360
Unique NameFC929360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 58/173 (33.53%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  265 VYCTAG--ISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAF 774
            V  TAG  +SGGH+NPAVT G+ +   ++ +RA++Y+ AQ L +     L++       T      + L  G     GL  E+I TF L++  ++   DP+     S V  + PL  G  V    LA    TG  +NPARS G A+       W + W++W+GP +G ++A F
Sbjct:   77 VLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVT----PVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR-----SQVRTIGPLLTGLIVGANSLAGGNFTGASMNPARSFGPAMATG---VWTNHWVYWIGPLLGGSLAGF 237          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.559e-17
Identity = 75/235 (31.91%), Postives = 110/235 (46.81%), Query Frame = 1
Query:   97 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGIL-GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLG---AISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYT--VFSATDPKR----SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            R+ +AEFI+            I  +  T P  +V   AG  +   +A AFG  +F  V   A +SGGH+NPAVTF   +  ++ +  A+ Y  +Q LG   A   + L  A ++   TR       +A   +   G   E + TF+LVYT  V    +P+       R+     L  L +G       LA   +TG  +NPARS G AV+    K   +Q ++W GP +GAA+AA
Sbjct:   20 RSYLAEFISTFLFVFTAVGSAISARMLTTP--DVTSSAGPLVATAVAQAFG--LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTR-------IAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVVSGHFK---NQAVYWAGPMVGAAVAA 240          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYPN 783
            GIA  +G ++ VLVY    ISGGH NPAVT      R+  L++   Y+VAQ LG+I   G ++         + G  ++ +     G  L A   E I TF L++ +       R+     V   A + IG  + +  +   P+TG  +NPARSLG A ++ +   ++  W++ + P +GA   A+  N
Sbjct:   72 GIAIVWGLVLTVLVYTVGHISGGHFNPAVTIAFASTRRFPLIQVPAYVVAQLLGSILASGTLRLL-------FMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNRA-----VGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGE---YEGIWIYLLAPVVGAIAGAWVYN 245          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQPM_METTM (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=aqpM PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 64/198 (32.32%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  211 GVGILG-------IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGA---AVIYNKDKAWDDQWLFWVGPFIGAAIAA 771
            G+G+LG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      V Y++AQ LGA  G  +            GG GA     G S    + AE++GTF+L+ T+      +R+ +       A + IG  V  +      I+G+ +NPAR+ G     +I+     W+   ++ +GP +GA +AA
Sbjct:   45 GIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.251e-16
Identity = 58/200 (29.00%), Postives = 93/200 (46.50%), Query Frame = 1
Query:  196 VDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGP-----FIGAAIAAF 774
            ++     G+L  A A G  + +++     ISGGH NPAV+  + L   +  +  + Y V+Q  G + G  L K    ++ ++   G     + +       L  EI+ T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+ G AV+      WD  W++W+GP     F+G  I  F
Sbjct:   59 IENSPNTGLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTLVGGLKTMLLIPYWVSQLFGGMIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGVEIVMTMLLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVMAG---YWDFHWIYWLGPLLAGLFVGLLIRLF 250          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 64/187 (34.22%), Postives = 90/187 (48.13%), Query Frame = 1
Query:  220 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGA---NELADGYSTGVGLAAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            + G+A A      VLV     +SGGH+NPAVT  L     ++  R+ +Y+ AQ L +     L++     Y T  GG A   + L  G     GL  EII TF L++ V++   DP+     S VP   PL  G  V    +A    +G  +NPARS G A+       W   W++W+GP IG  +A
Sbjct:   58 LAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLR-----YLT--GGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR-----SSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPALATG---VWTHHWIYWLGPLIGGPLA 229          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.939e-16
Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGA-ISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYPN 783
            GI   +G ++ V++Y T  ISG H NPAVT    + R+    +  +Y+ AQ  G+ ++ + L   F  +    +G    +     S+G  L AEII +F+L++ +       R+  +     LA + +G  + +      PI+G  +NPARSLG A++  + K     W++ VGPF+G     F  N
Sbjct:   77 GICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGTTPTD-----SSGQALVAEIIISFLLMFVISGVATDSRATGE-----LAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKG---IWVYIVGPFVGIFAGGFVYN 250          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP8_NOTAL (Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 57/200 (28.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:  196 VDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGP-----FIGAAIAAF 774
            ++     G+L  A A G  + +++     ISGGH NPAV+  + +   +  +  + Y ++Q  G + G  L K    ++ ++   G     + +       L  EII T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+ G AV+      WD  W++W+GP     F+G  I  F
Sbjct:   57 IENSPDTGLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQIFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVTEALGVEIILTILLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGGISGACMNPARAFGPAVVAG---YWDFHWIYWLGPLLAGLFVGLLIRLF 248          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG----LVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYPN 783
            GI   +G ++ V+VY    ISG H NPAVT    +  +    +  +Y++AQ +G+I   G    L     ++Y+     G+N        G  LA EII +F+L++ +   ATD      D  +  +A + +G  + +      PI+G  +NPARS+G A++ +    +   W++ VGP IG    AF  N
Sbjct:   76 GICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSN--------GQSLAIEIIISFLLMFVISGVATD------DRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKH---VYTGLWVYVVGPIIGTLAGAFVYN 249          
BLAST of FC929360 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 53/188 (28.19%), Postives = 89/188 (47.34%), Query Frame = 1
Query:  196 VDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAF--QKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFI 753
            ++     G+L  A A G  + +++     ISGGH NPAV+  + +   +  +  + Y ++Q  G + G  L K    ++ ++   G     + +       L  EII T +LV  V        +  +  +  LAP  IGF+V +  LA   I+G  +NPAR+ G AV+      WD  W++W+GP +
Sbjct:   57 IENSPNTGLLQPALAHGLALGLIIATLGNISGGHFNPAVSLAVTVIGGLKTMLLIPYWISQLFGGLIGAALAKVVSPEERFWNASGAAFAIVQEQEQVAEALGIEIILTMLLVLAVCMG-----AVNEKTMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAG---YWDFHWIYWLGPLL 236          
The following BLAST results are available for this feature:
BLAST of FC929360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
TIP42_MAIZE1.193e-1733.53Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP51_MAIZE1.559e-1731.91Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
NO26_SOYBN2.659e-1731.22Nodulin-26 OS=Glycine max PE=1 SV=2[more]
AQPM_METTM4.535e-1732.32Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
AQP8_RAT2.251e-1629.00Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
TIP41_ORYSJ2.939e-1634.22Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
NIP42_ARATH2.939e-1629.95Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
AQP8_NOTAL8.552e-1628.50Aquaporin-8 OS=Notomys alexis GN=AQP8 PE=2 SV=1[more]
NIP1_NICAL1.117e-1530.37Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]
AQP8_MOUSE1.459e-1528.19Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BB07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929360 ID=FC929360; Name=FC929360; organism=Citrus clementina; type=EST; length=812bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACA
ACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
ATTGGTGCAGCAATTGCAGCTTTCTACCCCAATTCATCTTGAGAGCTGGA
GCTGTCAAGGCT
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