FC929388

Overview
NameFC929388
Unique NameFC929388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig306 contig Ccv1_Contig306:101..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB8_MOUSE (Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.056e-51
Identity = 98/175 (56.00%), Postives = 124/175 (70.86%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 527
            YISS  + K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S           I +AT RD  SGGV ++Y++  +GW K+   DV +L Y Y
Sbjct:   97 YISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKY 271          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB5_SCHPO (Proteasome subunit beta type-5 OS=Schizosaccharomyces pombe GN=pts1 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 1.056e-51
Identity = 100/170 (58.82%), Postives = 125/170 (73.53%), Query Frame = 3
Query:    6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGEL 515
            I+SQ+VKK+IEINPY+LGT+AGGAADCQFW   LG++CRLH+L NK  ISV+ ASK+L+NI YSY+G GLS+GTM+AG  + G  LYY+DS+G RLKG  FSVGSGS +AYGVLDSGY++D+S           I  AT RDA SGG  ++Y++  NGW      DV  L
Sbjct:   87 IASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGGTALYYIDSDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENGWVFHGNFDVDSL 256          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB8_BOVIN (Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.802e-51
Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 527
            YI++  V K+IEINPY+LGTM+G AADC +W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ +AYGV+DSGY+ D+SI          I HAT RD+ SGGV ++Y++  +GW K+   DV +L + Y
Sbjct:   97 YIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQY 271          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB8_RAT (Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 3.073e-51
Identity = 97/179 (54.19%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVT 539
            YI++  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ D+S           I +AT RD+ SGGV ++Y++  +GW K+   DV +L + Y   T
Sbjct:   97 YIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHKYREAT 275          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB8_HUMAN (Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 8.942e-51
Identity = 96/175 (54.86%), Postives = 125/175 (71.43%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 527
            YIS+  V K+IEINPY+LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++  YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSGY+ ++S           I +AT RD+ SGGV ++Y++  +GW K+   DV +L + Y
Sbjct:   97 YISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQY 271          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB8_CANFA (Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.168e-50
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHY 527
            YISS  V K+IEINP +LGTM+G AADCQ+W R L  +CRL+ L N  RISV+ ASKLL+N++Y YRGM LS+G+MI GWD+ GPGLYYVD  G RL G  FS GSGS YAYGV+DSGY+  +S           I +AT RD+ SGG+ ++Y++  +GW K+   DV EL + Y
Sbjct:   97 YISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTYAYGVMDSGYQPSLSPEEAYELGRRAITYATHRDSYSGGIINMYHMKEDGWVKVESTDVNELLHQY 271          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB5_YEAST (Proteasome component PRE2 OS=Saccharomyces cerevisiae GN=PRE2 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.992e-50
Identity = 98/174 (56.32%), Postives = 125/174 (71.84%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHY 521
            +++SQ+VKK+IEINP++LGTMAGGAADCQFW   LG +CRLHEL  K RISV  ASK+L+N++Y Y+G GLS+GTMI G+  + GP +YYVDS+G RLKG  F VGSG  +AYGVLDS YK+D+S+          I  A  RDA SGG  ++Y+V  +GW      DVGEL +
Sbjct:  100 WVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFW 273          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB11_HUMAN (Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 77/172 (44.77%), Postives = 110/172 (63.95%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELH 518
            Y++  +  K+I ++ ++LGT +G +ADC  W+R L  + RL EL   +  SV  A+KLL+ ++  YRG+ L V T + GWD +GP L+YV S+G RL+G  FSVGSGSPYAYGVLD GY++DMS           + HAT RDA SGG   +++V  +GW+ +S  D   L+
Sbjct:   74 YVACPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWDRSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATHRDAYSGGSVDLFHVRESGWEHVSRSDACVLY 245          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB11_MOUSE (Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.627e-37
Identity = 77/172 (44.77%), Postives = 109/172 (63.37%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELH 518
            Y++  + +K+I ++  +LGT +G +ADC  W+R L  + RL EL   +  SV G +KLLA ++  YRG+ L V T + GWD +GP L+YV S+G  L+G  FSVGSGSPYAYGVLD GY +DM+I          + HAT RDA SGG   +++V  +GW+ +S  D   L+
Sbjct:   74 YVACPASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSCYRGLDLCVATALCGWDHSGPALFYVYSDGTCLQGDIFSVGSGSPYAYGVLDRGYHYDMTIQEAYTLARCAVAHATHRDAYSGGSVDLFHVRESGWEYVSRSDACVLY 245          
BLAST of FC929388 vs. ExPASy Swiss-Prot
Match: PSB8_PIG (Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.307e-29
Identity = 61/104 (58.65%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  120 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRD 431
            RL+ L N  RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G  FS GSG+ YAYGV+DSG+++D+SI          I HAT RD
Sbjct:    1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRD 104          
The following BLAST results are available for this feature:
BLAST of FC929388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PSB8_MOUSE1.056e-5156.00Proteasome subunit beta type-8 OS=Mus musculus GN=... [more]
PSB5_SCHPO1.056e-5158.82Proteasome subunit beta type-5 OS=Schizosaccharomy... [more]
PSB8_BOVIN1.802e-5154.86Proteasome subunit beta type-8 OS=Bos taurus GN=PS... [more]
PSB8_RAT3.073e-5154.19Proteasome subunit beta type-8 OS=Rattus norvegicu... [more]
PSB8_HUMAN8.942e-5154.86Proteasome subunit beta type-8 OS=Homo sapiens GN=... [more]
PSB8_CANFA1.168e-5055.43Proteasome subunit beta type-8 OS=Canis familiaris... [more]
PSB5_YEAST1.992e-5056.32Proteasome component PRE2 OS=Saccharomyces cerevis... [more]
PSB11_HUMAN2.526e-3744.77Proteasome subunit beta type-11 OS=Homo sapiens GN... [more]
PSB11_MOUSE5.627e-3744.77Proteasome subunit beta type-11 OS=Mus musculus GN... [more]
PSB8_PIG3.307e-2958.65Proteasome subunit beta type-8 (Fragment) OS=Sus s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BE08RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929388 ID=FC929388; Name=FC929388; organism=Citrus clementina; type=EST; length=862bp
GCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTAC
ATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAG
AAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAA
TTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTAT
CGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGAC
TGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAA
CACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGAC
AGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAG
AAGAGCTATTTATCATGCAACATTCAGAGATGCAGCCAGTGGTGGTGTTG
CAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGTGAT
GATGTTGGAGAGCTTCACTACCATTATTATCCAGTCACGCCCAGTACGGT
GGAGCAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTCTTGCTCAAT
TTGGACCAGGTTTGAGATATTCCTCATATTCACAGATCCAGTGGAGGACT
TTACGGATTTGCTTCTGAACTTTGTCAATGTACCTTGGGTTGATCCCGGC
GATGACTTGTGAATTCAACCTAGTTAAGTTGATGCTTTAAGAACCCTGCA
TTTTCTTTTGGTATTTTCATTATGACAAGTACAGTTCTATTTTCTATTAA
GCATTTTGTTATAGTAATTTAGTTCCTGAGATTGCGATTGCATAAAAAAA
AAAAAAAAAAAA
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