FC929391

Overview
NameFC929391
Unique NameFC929391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG S+YG  F DENF  KHTGPG+LSMAN G  TN S FF+   K E LD KHVVFG V +GMD VK IE  GS  G  ++ ++I +CGQ+
Sbjct:  993 GTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG  F DENF  KH  P +LSMAN+GPGTNGS FF+ T  T  LDGKHVVFG+V+ G  VV+ IE + + + +    V IA+CG+L+
Sbjct:   82 GTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 282
            GTGGES+YG  F DENF  KH  P +LSMAN+GPGTNGS FF+ T  T  LDGKHVVFG+V+ G  VV+ +E + + + +  K V I +CG+L+
Sbjct:   81 GTGGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQLS 282
            GTGGES+YG  F DE F   H+ P +LSMANAGP TNGS FF+  + T  LDGKHVVFG+V++G  VV+ IE   +++G   K PVVIADCGQLS
Sbjct:   80 GTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQLS 282
            GTGG S+YG  FADENF  KH G G LSMANAG  TNGS FF+ T KT WLDG+HVVFG+++EGMDVV+ IE+     G R  + V+IA  G ++
Sbjct:   97 GTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.080e-24
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG+S+YG  F DENF  KHTGPG+LSMAN G  TN S FF+   K E LD KHVVFG V +GMD V+ IE  GS  G  ++ + I +CGQL
Sbjct: 2961 GTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.080e-24
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGES+YG  F DENF  KH   G+LSMANAGP TNGS FF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   92 GTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGES+YG  F DENF  KH   G+LSMANAGP TNGS FF+ T  T  LDGKHVVFGQV++G+ V + +E V  +  +  K  VIA+CG+L
Sbjct:   92 GTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGES+YG  F DENF  KH   G+LSMANAG  TNGS FF+ T  T  LDGKHVVFGQV++GM V K +E V     +  K  VIA+CG+L
Sbjct:   92 GTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of FC929391 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 GTGGESVYGS*FADENFVKKHTGPGILSMANAGPGTNGSHFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 279
            GTGG+S+YG+ F DENF  +HT  G+LSMANAG  TNGS FF+ TA T WLDGKHVVFG+V+EG D+V  I+ V      R  K V I  CG+L
Sbjct:  103 GTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
The following BLAST results are available for this feature:
BLAST of FC929391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
RBP2_BOVIN4.847e-2558.06E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPID_EMENI4.847e-2556.38Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPOR4.847e-2555.32Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_AMAMU4.847e-2560.00Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
CYP5_CAEEL4.847e-2558.95Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
RBP2_MOUSE1.080e-2458.06E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPID_MOUSE1.080e-2458.0640 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_RAT1.410e-2458.0640 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_BOVIN3.142e-2459.1440 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIB_ARTBE3.142e-2458.51Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BE11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929391 ID=FC929391; Name=FC929391; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAGTCTACGGCTCATAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCATTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTATATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAACAAAAAAGAAGAGA
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