FC929395

Overview
NameFC929395
Unique NameFC929395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length804
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929395 vs. ExPASy Swiss-Prot
Match: BRE_CERAE (BRCA1-A complex subunit BRE OS=Cercopithecus aethiops GN=BRE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:   97 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHL*ETLERQVSQAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 525
            KL  +P ++ +L     + +P +  G C+ +Y+P +   L  +V   +     RR +I A    FG  + E D+  + K    +    F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361
[Close]
BLAST of FC929395 vs. ExPASy Swiss-Prot
Match: BRE_BOVIN (BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:   97 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHL*ETLERQVSQAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 525
            KL  +P ++ +L     + +P +  G C+ +Y+P +   L  +V   +     RR +I A    FG  + E D+  + K    +    F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361
[Close]
BLAST of FC929395 vs. ExPASy Swiss-Prot
Match: BRE_XENLA (BRCA1-A complex subunit BRE OS=Xenopus laevis GN=bre PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   97 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHL*ETLERQVSQAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLV-LFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 525
            KL  +P ++ +L     + +P +  G C+ +Y+P + + L  +V   +     RR +I A    FG  + E D+  + K    ++   F FLV    L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLFLSPRIEHALGGSSALHIPVFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHTVDLPLYFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 362
The following BLAST results are available for this feature:
BLAST of FC929395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
BRE_CERAE4.794e-1130.34BRCA1-A complex subunit BRE OS=Cercopithecus aethi... [more]
BRE_BOVIN4.794e-1130.34BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE P... [more]
BRE_XENLA8.177e-1130.14BRCA1-A complex subunit BRE OS=Xenopus laevis GN=b... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2BF03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929395 ID=FC929395; Name=FC929395; organism=Citrus clementina; type=EST; length=804bp
GTGGGGTGCCCCTGGAGACATCCACAGAAAATATCCTTGCAGGTCATATA
TCCTGTTAATAGAAAGTATGTTTCTGCTCCTTCAGCACCTCATCTTAAAT
TAATGTCAACACCTGCGTTGAAGTCACTGTTTTCTGTTGATGATGTCAAA
CTTCCTCCATGGTTGGACGGAATGTGTATGGCTGAATACCTTCCCCATCT
ATAAGAAACCCTTGAGAGACAGGTCTCACAGGCAGTTTCATTAATCGAAG
TTAGAAGACGCTTTATTGAAGCATTAGCTCCTCTATTTGGAAGACCGATA
GAGACTGATTCGGTTTTTTACAGAAAGTCTATGTTTTTTGTTGCCTCTGG
TGCTTTCTCATTCTTGGTGCTATTTTTCCTTTCAACTCAATTTCCAAAGC
AGCAGCCATCTCTCATGCTTCAAAGTTCCATGTATTTCAACTCTCAAGGC
ATGCCGATCAAATCACCCCTTCTGACAGATTATCCTTGGAGTCCAAGATG
GGAACATTCACAAATGGCTGAGAGAACATTTGAATTTTTGGTTGATGAAT
CTGTAAACTTTAAAAAGTACTGCAACGAAGCCCAACTTCAACAGAACCAA
CACTAGTGCATTGTCATGGCAGAATTATCCTTTCATTTGTTTTAGCCCAT
AGTACCCATTCGAAGTTGTGTAATGTGTGGAACCTGTATTCTCGAATTCT
TTTCCTTGACATTTGTATAAGCTTTTGTCTCGGTGTTGGTATAATTGTCA
TTAGCCTTTGGTGTTGTATTTGTTCATAAAGAAATGAAGCAACTCAATTT
CGTT
back to top