FC929397

Overview
NameFC929397
Unique NameFC929397
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15011 contig Ccv1_Contig15011:98..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929397 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 3 
Query:    3 DQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKL 209
            D +EILSNGKYK++LHR  VNK+K R+SW VF EPP + +V  PLP+ V +  PP++  + F  +   KL
Sbjct:  279 DTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIVLQPLPETVSEVEPPRFPPRTFAQHLKHKL 348
[Close]
BLAST of FC929397 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.764e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:    3 DQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 224
            D +EILSNGKYK++LHR  VNK+K R+SW VF EPP + ++  PLP+ V ++ P  +  + F ++   KL +  Q
Sbjct:  277 DTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQHKLFRKSQ 351
[Close]
BLAST of FC929397 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.043e-13
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 3 
Query:    3 DQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTV-VGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 224
            D +EILSNG+Y +VLHR  VN++  R+SW VF EPP D+V + PLP+LV + +P ++  + FK +   KL K  Q
Sbjct:  295 DALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDRKLFKKKQ 369
The following BLAST results are available for this feature:
BLAST of FC929397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
LDOX_PERFR9.501e-1450.00Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
LDOX_MALDO2.764e-1345.33Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_MAIZE8.043e-1348.00Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BF05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929397 ID=FC929397; Name=FC929397; organism=Citrus clementina; type=EST; length=410bp
GGGACCAGATCGAGATTCTGAGCAATGGCAAGTACAAAGCCGTGCTGCAT
AGAACCACTGTTAACAAGGACAAGACGAGAATGTCGTGGCCAGTTTTCTT
GGAGCCACCTGCGGATACGGTGGTGGGTCCCCTTCCTCAGCTGGTTGACG
ATGAAAATCCTCCAAAGTACAAGGCCAAGAAGTTCAAGGATTACAGTTAC
TGTAAACTTAACAAACTTCCTCAGTAGATTTTTCATTATGAGAAAAATAA
CACCAGTATCCGCTGGCCGCTCATGTTTGATCTCGTCACTGTACGTTAGC
GATGCTTGTTTGTTGTTGCGATCTTGTTTCTGAAATGTAATCGCGGGTGT
TAGCAATAATAAATAATCCTTTCATTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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