FC929414

Overview
NameFC929414
Unique NameFC929414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:386..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 67/110 (60.91%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  V+EG+LYVGFVTS+Q N  N L  K LNKGDVFVFP+GLIHFQFN      AAA  AL+SQ PG +TIA+ VFG+NP I+ D L KAFQ+D K V  LQ +F   N
Sbjct:  118 EILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAKAFQVDKKAVDWLQAQFWENN 227          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA-AYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 310
            EIF VLEGTLYVGFVTS+  +N L +KVLNKGDVFVFP+GLIHFQFN+     A A SA++SQ PG +TIA+ VF +NP I+ D L KAFQ+D KI+  LQ
Sbjct:  119 EIFTVLEGTLYVGFVTSNP-DNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLLQ 218          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 9.680e-27
Identity = 66/110 (60.00%), Postives = 78/110 (70.91%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLN--NTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  VLEG+LYVGFVTS+Q N  N L  K LNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG++P I+ D L KAFQ+D K +  LQ +F   N
Sbjct:  118 EILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSHPPISDDVLAKAFQVDKKAMDWLQAQFWENN 227          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL87_ORYSJ (Germin-like protein 8-7 OS=Oryza sativa subsp. japonica GN=GER6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.264e-26
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ D L KAFQ++   +  LQ +F   N
Sbjct:  117 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVALAALSSQNPGAITIANAVFGSKPPISDDILAKAFQVEKGTIDWLQAQFWENN 223          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.157e-26
Identity = 65/108 (60.19%), Postives = 78/108 (72.22%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFPQGLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ + L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL88_ORYSJ (Germin-like protein 8-8 OS=Oryza sativa subsp. japonica GN=Os08g0189700 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.070e-25
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDKVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.070e-25
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            EI +V +G L VGFV+S+Q NN L  KVL +GDVFVFP GLIHFQ N+ +T A A++   SQ PG + IAD VFG+NPSI  + L KAFQLD K+V+ L   F
Sbjct:  120 EILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGSNPSIPQEVLAKAFQLDVKLVRFLHIVF 222          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.398e-25
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 319
            +IFLV++G L+VGFV+S++ N TL  KVL  GDVFVFP+GLIHF  NIG+TNA   SA  SQ PG + I D VFG+ P I+P  L KAF LD   VK LQ  F
Sbjct:  119 QIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQAVF 221          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.826e-25
Identity = 64/108 (59.26%), Postives = 77/108 (71.30%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  VLEGTLYVGFVTS+  NNTL +KVLNKGDVFVFP+GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+   L KAFQ++   +  LQ +F   N
Sbjct:  116 EILTVLEGTLYVGFVTSNP-NNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDIVLAKAFQVEKGTIDWLQAQFWENN 222          
BLAST of FC929414 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.937e-25
Identity = 63/108 (58.33%), Postives = 76/108 (70.37%), Query Frame = 2
Query:   11 EIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKFINGN 331
            EI  VLEGTLYVGFVTS+  NNTL +KVL KGDVFVFP GLIHFQFN      A A +AL+SQ PG +TIA+ VFG+ P I+ + L KAFQ++   +  LQ +F   N
Sbjct:  117 EILTVLEGTLYVGFVTSNP-NNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQAQFWENN 223          
The following BLAST results are available for this feature:
BLAST of FC929414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
GL123_ORYSJ4.345e-2760.91Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL81_ORYSJ9.680e-2764.36Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL124_ORYSJ9.680e-2760.00Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL87_ORYSJ1.264e-2660.19Germin-like protein 8-7 OS=Oryza sativa subsp. jap... [more]
GL85_ORYSJ2.157e-2660.19Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL88_ORYSJ1.070e-2559.26Germin-like protein 8-8 OS=Oryza sativa subsp. jap... [more]
GL16_ARATH1.070e-2557.28Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL14_ARATH1.398e-2558.25Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL810_ORYSJ1.826e-2559.26Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL86_ORYSJ6.937e-2558.33Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2BH02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2BH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929414 ID=FC929414; Name=FC929414; organism=Citrus clementina; type=EST; length=512bp
GGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTT
TTGTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAAT
AAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAA
CATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTCC
CGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATC
AATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAA
AGATCTTCAAAATAAGTTCATTAATGGCAATTAGGAGAAGGAATTAATGA
GCTTTAATATAAATGGCCTCTTCACTAGTGGCTGTATTACTTTATCTCCA
GATTATCATATCTTAATTAATGTAATAAAAGAGGTCTCTCATGAACCTCT
CTCCAGGCTGACTGTGGCCATGTAATAAACATAATTGTTATTGTTAAAAA
AAAAAAAAAAAA
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