FC929424

Overview
NameFC929424
Unique NameFC929424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.612e-21
Identity = 44/85 (51.76%), Postives = 62/85 (72.94%), Query Frame = 1
Query:  211 EQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 465
            +++ +    ++ EEVA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+   G DA+  FEDVGHS  AREM+ +YYIGDI PS
Sbjct:   14 QEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  223 SDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRK 480
            SDP +  ++ EEVA  N  ++ W++I G+VYD++ F+ +HPGG+EVL+   G DAT  FEDVGHS  AREM+ +YYIGD+ P+ +  K
Sbjct:   16 SDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPK 103          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  229 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDK 525
            PK++ ++EVA HN  ++ W+II  KVYDVS F D+HPGGDE+++   G+DAT  F D+GHSD A  ++   YIGD+D ++   +R  +     + NQ K
Sbjct:    2 PKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS---ERVSVEKVSTSENQSK 97          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.772e-20
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  250 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTPE 534
            EVA HN  KD WL+I   +YDV++F+++HPGG+EVLI   GKDAT +FEDVGHS+ AR+MM KY IG++  S    + +     +P ++ ++  E
Sbjct:   13 EVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGELVES---ERTSVAQKSEPTWSTEQQTE 104          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQQPAYNQDKTP 531
            K  + EE+  HN +KD +++I+GKVYDVS+F DDHPGG ++++   G+DAT  ++D+GHS +A E++++ YIGD+ P T  R +    P+  +++ D  P
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGTEERLKELKKPR--SFDNDTPP 101          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPST 468
            KI   +EV+ H    D W++I  KVYD++ F+ +HPGG+EVL+   GKDAT  FED+GHSD AREM+++Y IG +D ++
Sbjct:    4 KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.291e-19
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 477
            K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT DFEDVGHS  ARE+   Y IG++ P   P+
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGELHPDDRPK 87          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.585e-18
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  220 ASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPPQ-QPAYNQDKTPE 534
            + D K     EVA +N     W II   VYDV++F+++HPGG+EVLI   GKDAT  FEDVGHS  AREMM +Y +G++    V  +R+ +P + +P +N ++  E
Sbjct:    3 SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL----VAEERSNVPEKSEPTWNTEQKTE 104          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.585e-18
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:  208 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPR 477
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGHS  AREM   + IG++ P   P+
Sbjct:    2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPK 91          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.585e-18
Identity = 37/74 (50.00%), Postives = 57/74 (77.03%), Query Frame = 1
Query:  235 IHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            I+  EEVA H    D W+I++GKVY++S+++D+HPGG+EV++   G DAT  F+D+GHSD A E+++K YIG++
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNL 83          
The following BLAST results are available for this feature:
BLAST of FC929424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CYB5B_HUMAN2.612e-2151.76Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5B_RAT3.412e-2150.00Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_YEAST2.888e-2044.44Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_DROME3.772e-2047.37Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB51_SCHPO1.433e-1942.00Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_RHIST2.445e-1950.63Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_ALOSE9.291e-1950.00Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_MUSDO1.585e-1844.34Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_HUMAN1.585e-1846.67Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_CANTR1.585e-1850.00Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929424 ID=FC929424; Name=FC929424; organism=Citrus clementina; type=EST; length=875bp
TGTAAGCAAGCGGATCACAGATTCCTCACTTTGTTTGATTTCAAATTCTA
CTTCTTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTG
ATCAAAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTA
CTTTATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAG
CTGCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAG
AGGTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGC
AAGGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGA
GGTTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATG
TGGGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGT
GACATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCA
GCAACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTC
TACAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGA
CACTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTC
CGGAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATC
TTTTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGT
TCGTAGTCCACCAGAGACCATATTGTCTGTCTTCTCTTGAGTGTCTTGTT
TCTAATGTTTTTCATTGATGGTCATGGGATAATGTTTACTTTTATTGGAT
CCTTGGATGAAAAGCAAGGGGCAAG
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