FC929424

Overview
NameFC929424
Unique NameFC929424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  250 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIP 495
            +++ H      +L I GKVYD + F+D+HPGG+EVLI   G+DAT  FEDVGHSD AR++M K  +G+    +  + +A  P
Sbjct:   11 DLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKPKAKSP 92          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN    CW+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  538 MNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 616          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN  +  W+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A+++++ Y IG++
Sbjct:  535 MNTSAKMYSMSEVRKHNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K +   EV  HN     W+I++G VYD + F+ DHPGG++ ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  511 MNTATKSYSLSEVRRHNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILLNAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 589          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K +   EV  HN     W+I+ G VYD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  513 MNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGEL 591          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN  +  W+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A+++++ Y IG++
Sbjct:  535 MNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            K++   EV  HN     W+I+ G VYD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y +G++
Sbjct:  522 KMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAI-HSDKAKKMLEDYRVGEL 595          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K+    EV  HN  +  W+I+ G +YD + F+ DHPGG + ++   G D T +F+ + HSD A++M++ Y IG++
Sbjct:  524 MNTSSKMFSMSEVKKHNSAESAWIIVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 602          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.449e-12
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K +   EV  HN     W+I+ G VYD + F+ DHPGG + ++   G D T +FE + HSD A++M++ Y IG++
Sbjct:  509 MNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGEL 587          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN     W+I+ G +YD + F+ DHPGG + ++   G D T +FE + HSD A+++++ Y IG++
Sbjct:  541 MNTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 619          
The following BLAST results are available for this feature:
BLAST of FC929424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CYB5_MORAP7.362e-1645.12Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
NIA2_ARATH2.618e-1338.75Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA2_BRANA1.697e-1236.25Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA1_PHAVU1.697e-1238.75Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA2_SOYBN2.895e-1238.75Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_BRANA2.895e-1236.25Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_LOTJA6.449e-1238.67Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA_BETVE6.449e-1236.25Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA1_SOYBN6.449e-1238.75Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA1_ARATH8.423e-1236.25Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929424 ID=FC929424; Name=FC929424; organism=Citrus clementina; type=EST; length=875bp
TGTAAGCAAGCGGATCACAGATTCCTCACTTTGTTTGATTTCAAATTCTA
CTTCTTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTG
ATCAAAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTA
CTTTATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAG
CTGCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAG
AGGTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGC
AAGGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGA
GGTTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATG
TGGGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGT
GACATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCA
GCAACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTC
TACAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGA
CACTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTC
CGGAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATC
TTTTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGT
TCGTAGTCCACCAGAGACCATATTGTCTGTCTTCTCTTGAGTGTCTTGTT
TCTAATGTTTTTCATTGATGGTCATGGGATAATGTTTACTTTTATTGGAT
CCTTGGATGAAAAGCAAGGGGCAAG
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