FC929424

Overview
NameFC929424
Unique NameFC929424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:1..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYY 444
            K++ ++EV+ HN+  D W+I+ GKVY+++ ++  HPGG+++L+ + G+DATN FE      S   M DK+Y
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFE------SYHPMTDKHY 77          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K+    EV  H+     W+I+ G VYD + F+ DHPGG + ++   G D T +F+ + HSD A++M++ Y IG++
Sbjct:  509 MNTASKMFSVSEVKKHSSPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 587          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 26/80 (32.50%), Postives = 48/80 (60.00%), Query Frame = 1
Query:  217 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            M +  K++   EV  HN     W+++ G VY+ + F+ DHPGG + ++   G D T +F+ + HSD A+ +++ + IG++
Sbjct:  547 MNTTSKMYSMSEVKKHNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKRLLEDFRIGEL 625          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  223 SDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 456
            +D K     EV  H+     W+++ G VYD ++F+ DHPGG + ++   G D T +F+ + HSD A+ ++D Y IG++
Sbjct:  539 TDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 615          
BLAST of FC929424 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  247 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIG 450
            EE+A HNK +DCW+ I G VY+++ +M+ HPGG+E L+ A G+D T+ F+ V    +   M+ +  IG
Sbjct:   60 EELAQHNKKEDCWICIRGMVYNITPYMEYHPGGEEELMKAAGRDGTDLFDQVHRWVNYESMLKECLIG 127          
The following BLAST results are available for this feature:
BLAST of FC929424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
FAD5B_DICDI5.460e-1140.85Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
NIA2_PHAVU7.131e-1136.25Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NIA_SPIOL9.313e-1132.50Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA1_ORYSJ9.313e-1135.90Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NB5R4_XENTR9.313e-1142.65Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929424 ID=FC929424; Name=FC929424; organism=Citrus clementina; type=EST; length=875bp
TGTAAGCAAGCGGATCACAGATTCCTCACTTTGTTTGATTTCAAATTCTA
CTTCTTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTG
ATCAAAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTA
CTTTATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAG
CTGCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAG
AGGTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGC
AAGGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGA
GGTTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATG
TGGGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGT
GACATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCA
GCAACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTC
TACAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGA
CACTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTC
CGGAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATC
TTTTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGT
TCGTAGTCCACCAGAGACCATATTGTCTGTCTTCTCTTGAGTGTCTTGTT
TCTAATGTTTTTCATTGATGGTCATGGGATAATGTTTACTTTTATTGGAT
CCTTGGATGAAAAGCAAGGGGCAAG
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