FC929426

Overview
NameFC929426
Unique NameFC929426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10775 contig Ccv1_Contig10775:292..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.711e-25
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 279
            GTG  SIYG++F DENF  KHTGPG+LSMAN+GP TNG QFF+ TA  E+LDGKH VFG+V++G+  V+ IE V   +G  N+P   V IA+CG++
Sbjct:   86 GTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.711e-25
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV-EGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGG SIYG +F DENF  KH   G++SMANAGP TNGSQFF+ T KTEWLDG+HVVFG++  +    V+AIE +GSS GR +K   I D G L
Sbjct:   86 GTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTGGESIYG KF DENF  KH   G+LSMANAG  TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V     +  K  VIA+CG+L
Sbjct:   92 GTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 58/97 (59.79%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQLS 282
            GTGG+SIYGS+F DENF   H  PG+LSMANAGP +NGSQFF+ T KT WLDG HVVFG+V+ G D+VK I K  + +   +KP   V I   GQLS
Sbjct:   95 GTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISK--AETDNRDKPLEDVKIIKSGQLS 189          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 279
            GTGG+SIYG+KF DENF  +HT  G+LSMANAG  TNGSQFF+ TA T WLDGKHVVFG+V+EG D+V  I+ V    GR ++P   V I   G+L
Sbjct:  102 GTGGKSIYGAKFKDENFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNV--PKGRNDRPLKDVKIVKSGEL 195          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 255
            GTGG+SIYG KFADENF  +HT  G+LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V+EG ++V  IE V    GR+++PV
Sbjct:  103 GTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENV--PKGRSDRPV 185          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 GTGGESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTG  +IYG+ KF+DENF  +H  PG+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQV++GMD+V+ IE   ++  + N+ VVI  CG++
Sbjct:   90 GTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 1
Query:    1 GTGGESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            GTG  +IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+ V I  CG++
Sbjct:   88 GTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 279
            GTGG+SIYG KFADENF  +HT  G+LSMANAG  TNGSQFF+ T  T WLDG+HVVFG+V+EG +VV+ IE V    G +  + V I   GQ+
Sbjct:  104 GTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQI 197          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.410e-24
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE--KVGSSSGRTNKPVVIADCGQL 279
            GTGG+SIYG KF DENF  KH+  G+LSMANAG  TNGSQFF+ T  T WLDGKHVVFG+V+EG DVV+ IE  K G       +P+ IA  G+L
Sbjct:  103 GTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPA-EPIKIAKSGEL 196          
The following BLAST results are available for this feature:
BLAST of FC929426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PPIH_CRYNE3.711e-2558.33Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPIA_NEOCA3.711e-2560.64Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPID_HUMAN4.847e-2560.2240 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
PPIB_SCHPO4.847e-2559.79Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_EMENI4.847e-2560.42Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
PPIB_ASPNG4.847e-2563.53Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIH_EMENI6.330e-2555.32Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIH_ASPOR6.330e-2556.38Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIB_ASPFU8.268e-2559.57Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_NEUCR1.410e-2461.05Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929426 ID=FC929426; Name=FC929426; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAAAAAAAAAAAAAAAA
back to top