FC929426

Overview
NameFC929426
Unique NameFC929426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.738e-23
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 279
            G GG+SI+G+ F DENF  KH  PG LSMAN G  TNGSQFF+ T    WLDGKHVVFG+V++GMDVV  IE V + S     K V+I + G+L
Sbjct:  103 GIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.724e-22
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 GTGGESIYGSK-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE--KVG-SSSGRTNKPVVIADCGQL 279
            GTG   I+G K F DENF  KH  PG+LSMANAGP TNGSQFF+ T  T +LD KHVVFG+V EGMDVVK +E  K G       N  VVI+ CG++
Sbjct:   86 GTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22
Identity = 50/95 (52.63%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 GTGGESIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 279
            GTG   IYG  +FADENF++KHTG G+LSMAN+GP +NG QFF+     ++LDGKHVVFG++V+G+  ++ IE V +  + R   PV I +CGQ+
Sbjct:   84 GTGAMCIYGGDRFADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22
Identity = 56/94 (59.57%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 279
            G GGESIYG  F DENF+ KH   G LSMANAG  TNGSQFF+ TA+T  L+G H VFG+VVEG D+VK +E   +  S R     VI DCGQL
Sbjct:   82 GIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.551e-22
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 216
            GTGG SIYG  F DENF  KH G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:  106 GTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIE 177          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.551e-22
Identity = 54/94 (57.45%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTA-KTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQ 276
            G GG+SIYG  F DENF  KH   G LSMAN G  TNGSQFF+ T  +  WLDGKHVVFGQVV+GMDVV  I+ V   ++ +  + V IA CG+
Sbjct:  105 GVGGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAKCGE 198          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.556e-22
Identity = 53/94 (56.38%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCGQL 279
            GTGGESIYG KF DENF  KH  P +LSMANAG  TNGSQ F+    T  LDGKHVVFG+V++G  +V+ IE      + +  K V I DCG L
Sbjct:   83 GTGGESIYGEKFEDENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKIEDCGVL 176          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.117e-21
Identity = 55/96 (57.29%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 279
            GTGGESIY  KF DENF  KH  P +LSMANAGP TNGSQ F+    T  LDGKHVVFG+V++G  +V+ IE         NKP   V I DCG L
Sbjct:   81 GTGGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIVRLIEN-QQCDQENNKPLRDVKIDDCGVL 175          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.117e-21
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 216
            GTGG SIYG  F DENF  KH G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:  106 GTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-21
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE 216
            GTGG SIYG  F DENF  KH G G +SMANAGP TNGSQFF+   K  WLDGKHVVFG+V++GM VV +IE
Sbjct:  106 GTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIE 177          
The following BLAST results are available for this feature:
BLAST of FC929426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CYPD_YEAST7.738e-2357.45Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPIH_GIBZE1.724e-2258.76Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIH_RHIOR2.941e-2252.63Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
PPID_DICDI2.941e-2259.57Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIC_HUMAN6.551e-2268.06Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
CYPB_YEAST6.551e-2257.45Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
PPID_KLULA8.556e-2256.38Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
PPID_YEAST1.117e-2157.29Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
PPIC_MOUSE1.117e-2168.06Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIC_BOVIN1.459e-2168.06Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929426 ID=FC929426; Name=FC929426; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAAAAAAAAAAAAAAAA
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