FC929426

Overview
NameFC929426
Unique NameFC929426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 252
            G GGESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  549 GMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNV-KVNPKTDKP 632          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL1_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryptococcus neoformans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.082e-16
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV 255
            G GG SIYG +FADE   + +  G GIL+MAN+GP TNGSQFF+  A T +LDGKH +FG+V  GM  ++ +E V   + + ++PV
Sbjct:   66 GRGGTSIYGDRFADEIHPELRFVGAGILAMANSGPNTNGSQFFITCAPTPYLDGKHTIFGRVSSGMKTIQRLEAV--RTDKDDRPV 149          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GG SIYG  F DE FV KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+V++G +VV  ++ +
Sbjct:   82 GRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.411e-16
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 252
            G GGESI+G +F DE +   +H  P  LSMANAG  TNGSQFF+    T WLD KH VFG+V +GM+VV+ I  V   + +T+KP
Sbjct:  551 GMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNV-KVNPQTDKP 634          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.162e-16
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 279
            G  GESIYG  F DENF   H   G+L M N G  +NGSQF++      +LD K+V FGQ++EG DV+  +E V + + R  +  VI   GQL
Sbjct:  213 GDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus musculus GN=Ppil2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.197e-15
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 252
            GTGGES +G  F DE      HTG G+LSMAN+GP TN SQFF+      +LD KH +FG+VV G D + A+E V  S  +T++P
Sbjct:  339 GTGGESFWGKPFKDEFRPNLSHTGRGVLSMANSGPNTNKSQFFITFRSCAYLDKKHTIFGRVVGGFDTLTAMENV-ESDPKTDRP 422          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo sapiens GN=PPIL2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.197e-15
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP 252
            GTGGES +G  F DE      HTG GILSMAN+GP +N SQFF+      +LD KH +FG+VV G DV+ A+E V  S  +T++P
Sbjct:  339 GTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV-ESDPKTDRP 422          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYP9_SCHPO (Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosaccharomyces pombe GN=cyp9 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.197e-15
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 249
            GTGGESI+   F DE     KH  P  +SMAN+GP TNGSQFF+ T  T WLDGKH +F +   G+DVV  IE+     G T+K
Sbjct:  514 GTGGESIWKKDFEDEISPNLKHDRPFTVSMANSGPNTNGSQFFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQ-----GETDK 592          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 273
            G  GESIYG  F DENF   H   G+L MAN G  +NGSQF++    T +LD K V FGQ++EG +V+K +E V + + R      I D G
Sbjct:  217 GDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSG 307          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizosaccharomyces pombe GN=cyp8 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 44/92 (47.83%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIAD 267
            G GG+SI+G  F DE F    KH   GI+SMAN G  TNGSQFF+     + LD KH +FG+VV G++V+ A+EKV ++S    K P+ + D
Sbjct:  335 GRGGQSIWGKPFKDE-FCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHTIFGRVVGGLNVLDALEKVPTNSNDHPKLPIKLED 425          
The following BLAST results are available for this feature:
BLAST of FC929426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PPWD1_BOVIN4.858e-1752.94Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL1_CRYNE1.082e-1650.00Peptidyl-prolyl cis-trans isomerase-like 1 OS=Cryp... [more]
CYP9_CAEBR1.414e-1654.05Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPWD1_MOUSE2.411e-1652.94Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL6_BOVIN9.162e-1645.16Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIL2_MOUSE1.197e-1550.59Peptidyl-prolyl cis-trans isomerase-like 2 OS=Mus ... [more]
PPIL2_HUMAN1.197e-1551.76Peptidyl-prolyl cis-trans isomerase-like 2 OS=Homo... [more]
CYP9_SCHPO1.197e-1552.38Peptidyl-prolyl cis-trans isomerase 9 OS=Schizosac... [more]
PPIL6_HUMAN2.041e-1546.15Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
PPIL2_SCHPO1.323e-1447.83Peptidyl-prolyl cis-trans isomerase cyp8 OS=Schizo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929426 ID=FC929426; Name=FC929426; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAAAAAAAAAAAAAAAA
back to top