FC929426

Overview
NameFC929426
Unique NameFC929426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length550
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10775 contig Ccv1_Contig10775:292..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryptococcus neoformans GN=CYP8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK---KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG 237
            G GGES +G  F DE+  K   KH   G+LSMAN+GP TNGSQFF     T  LDGKH VFG++V G + +  IE+V    G
Sbjct:  373 GRGGESYWGEPFRDEHGEKGAYKHDSRGVLSMANSGPRTNGSQFFFTFRPTPHLDGKHTVFGKLVGGEETLDKIERVNVRPG 454          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus oryzae GN=cyp4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.566e-14
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMD-VVKAIEKV 222
            G GG SI+G KF DE     KH   GI+SMAN+GP TNGSQFF+  AK   LD K+ VFG+V++G D  +  +EKV
Sbjct:   66 GKGGNSIWGKKFNDEIRSTLKHNSRGIVSMANSGPNTNGSQFFITYAKHPHLDTKYTVFGKVIDGADSTLDMMEKV 141          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_RAT (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rattus norvegicus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GG SI+G KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   60 GRGGSSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GG SI+G KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   60 GRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_CHICK (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gallus gallus GN=PPIL3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GG SI+G KF DE +   KH+  G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   60 GKGGTSIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.120e-13
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:    1 GTGGESIYGSKFADENFVK--KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV 258
            G GGESI+   F+DE F+    H   G+LSMAN G  TNGSQFF+     ++LD KH +FG++V G D +  IEK+ +  G T+ P+V
Sbjct:  339 GHGGESIWDKPFSDE-FISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEG-TDVPMV 424          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GGESI+   F DE     KH   G+LSMAN G  TNGSQFF+  A    LDG H VFG+VV G+DV+  +E +
Sbjct:  345 GKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESI 419          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL2_ARATH (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GGESI+G  F DE N    H+G G++SMAN+GP TNGSQFFV       L+ KH VFG VV G+  + A+E V
Sbjct:  403 GKGGESIWGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLATLAAMENV 477          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus musculus GN=Ppil3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.559e-13
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKV 222
            G GG SI+  KF DE +   KH   G++SMAN GP TNGSQFF+   K   LD K+ VFG+V++G++ +  +EK+
Sbjct:   60 GRGGSSIWAKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKL 134          
BLAST of FC929426 vs. ExPASy Swiss-Prot
Match: PPIL3_CRYNE (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans GN=CYP10 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.482e-13
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 GTGGESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEK 219
            G GG+SI+G  F+DE     +    G+++MANAGP TN SQFF+  AK   LDGK+ +FG+V++GM+ + ++EK
Sbjct:   60 GKGGQSIWGRPFSDEIRQTLRFNNRGMVAMANAGPDTNKSQFFITYAKQPSLDGKYSIFGKVIDGMETLDSMEK 133          
The following BLAST results are available for this feature:
BLAST of FC929426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
PPIL2_CRYNE1.323e-1451.22Peptidyl-prolyl cis-trans isomerase-like 2 OS=Cryp... [more]
PPIL3_RHIOR6.566e-1453.95Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhiz... [more]
PPIL3_RAT1.120e-1349.33Peptidyl-prolyl cis-trans isomerase-like 3 OS=Ratt... [more]
PPIL3_HUMAN1.120e-1349.33Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
PPIL3_CHICK1.120e-1349.33Peptidyl-prolyl cis-trans isomerase-like 3 OS=Gall... [more]
CYP4_CAEEL1.120e-1346.59Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL2_RHIOR2.495e-1352.00Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
PPIL2_ARATH2.495e-1353.33Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arab... [more]
PPIL3_MOUSE5.559e-1348.00Peptidyl-prolyl cis-trans isomerase-like 3 OS=Mus ... [more]
PPIL3_CRYNE9.482e-1347.30Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929426 ID=FC929426; Name=FC929426; organism=Citrus clementina; type=EST; length=550bp
GGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTT
CGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGAC
CCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTGG
CTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACGT
CGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGC
CCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATAA
TGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTATG
TTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTAATCTTTATCTAA
TTTTCCTGCTATGTTACTTGTTCGGGTTGGATCGGGTCTCCGGTGGTGGT
TCTTGATGAACTGTTTTTTATGTCTTTCTATGAGCTGCCTTTTTAAATAA
GATAGGGCTTGTCTTGTTATATTACATAAAAAAAAAAAAAAAAAAAAAAA
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