FC929435

Overview
NameFC929435
Unique NameFC929435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDKA1_ARATH (Cyclin-dependent kinase A-1 OS=Arabidopsis thaliana GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.086e-24
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP 229
            GTP EDTW GVTSLPD+KSAFPKW   +L T V NL+P G+DLLSKML MDP++RI A++ALEHEYFKD+  +P
Sbjct:  221 GTPYEDTWRGVTSLPDYKSAFPKWKPTDLETFVPNLDPDGVDLLSKMLLMDPTKRINARAALEHEYFKDLGGMP 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.601e-20
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP+EDTWPGVT LPD+K +FPKW  K L  +V NLEP G DLL ++L  DPS+RITAK+AL H YF
Sbjct:  220 GTPSEDTWPGVTQLPDYKGSFPKWTRKGLEEIVPNLEPEGRDLLMQLLQYDPSQRITAKTALAHPYF 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_CHICK (Cell division control protein 2 homolog OS=Gallus gallus GN=CDC2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.872e-18
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            A GTPN D WP V SL D+K+ FPKW    LGT V+NL+  G+DLLSKML  DP++RI+ K AL H YF D+
Sbjct:  219 ALGTPNNDVWPDVESLQDYKNTFPKWKPGSLGTHVQNLDEDGLDLLSKMLIYDPAKRISGKMALNHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_CARAU (Cell division control protein 2 homolog OS=Carassius auratus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.171e-18
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPN + WP V SLPD+K+ FPKW S  L + V+NL+  GIDLL+KML  DP +RI+A+ A+ H YF D+
Sbjct:  221 GTPNNEVWPDVESLPDYKNTFPKWKSGNLASTVKNLDKNGIDLLTKMLIYDPPKRISARQAMTHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC28_CANAL (Cell division control protein 28 OS=Candida albicans GN=CDC28 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.114e-18
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPNE+ WP V  LPDFKS+FP+W  K L   V +L+  GIDLL +ML  DPSRRI+AK AL H YF D
Sbjct:  226 GTPNEEIWPDVNYLPDFKSSFPQWKKKPLSEAVPSLDANGIDLLDQMLVYDPSRRISAKRALIHPYFND 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_ORYCU (Cell division control protein 2 homolog OS=Oryzias curvinotus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.291e-18
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPN D WP V SLPD+KS FPKW    L ++V+NL+  G+DLL+KML  +P +RI+A+ A+ H YF D+
Sbjct:  221 GTPNNDVWPDVESLPDYKSTFPKWKGGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.585e-17
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++L  VV  L+  G DLL +ML  DP++RI+AK+AL H +F+DV
Sbjct:  220 GTPDESIWPGVTSMPDYKPSFPKWARQDLSKVVPPLDEDGRDLLGQMLIYDPNKRISAKNALVHRFFRDV 289          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLU (Cell division control protein 2 homolog OS=Oryzias luzonensis GN=cdc2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.070e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPN D WP V SLPD+K+ FPKW    L ++V+NL+  G+DLL+KML  +P +RI+A+ A+ H YF D+
Sbjct:  221 GTPNNDVWPDVESLPDYKNTFPKWKGGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_ORYLA (Cell division control protein 2 homolog OS=Oryzias latipes GN=cdc2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.070e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPN D WP V SLPD+K+ FPKW    L ++V+NL+  G+DLL+KML  +P +RI+A+ A+ H YF D+
Sbjct:  221 GTPNNDVWPDVESLPDYKNTFPKWKEGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_ORYJA (Cell division control protein 2 homolog OS=Oryzias javanicus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.703e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPN D WP V SLPD+K+ FPKW    L ++V+NL+  G+DLL+KML  +P +RI+A+ A+ H YF D+
Sbjct:  221 GTPNNDVWPDVESLPDYKNTFPKWMEGSLSSMVKNLDKNGLDLLAKMLIYNPPKRISAREAMTHPYFDDL 290          
The following BLAST results are available for this feature:
BLAST of FC929435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CDKA1_ARATH5.086e-2468.92Cyclin-dependent kinase A-1 OS=Arabidopsis thalian... [more]
CDK3_HUMAN7.601e-2065.67Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDC2_CHICK1.872e-1858.33Cell division control protein 2 homolog OS=Gallus ... [more]
CDC2_CARAU4.171e-1855.71Cell division control protein 2 homolog OS=Carassi... [more]
CDC28_CANAL7.114e-1860.87Cell division control protein 28 OS=Candida albica... [more]
CDC2_ORYCU9.291e-1854.29Cell division control protein 2 homolog OS=Oryzias... [more]
CDK2_CARAU1.585e-1755.71Cell division protein kinase 2 OS=Carassius auratu... [more]
CDC2_ORYLU2.070e-1752.86Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYLA2.070e-1752.86Cell division control protein 2 homolog OS=Oryzias... [more]
CDC2_ORYJA2.703e-1752.86Cell division control protein 2 homolog OS=Oryzias... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929435 ID=FC929435; Name=FC929435; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAAAAGTGCTCTAGAACATG
AATACTTCAAGGACGTCTAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAAAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAATGATGTT
CCTGGTGCGCATGAACGGCTGCCTGAAGGTGCGGA
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