FC929435

Overview
NameFC929435
Unique NameFC929435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_BOVIN (Cell division control protein 2 homolog OS=Bos taurus GN=CDC2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.703e-17
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            A GTPN + WP V SL D+KS FPKW    L + V+NL+  G+DLLSKML  DP++RI+ K AL H YF D+
Sbjct:  219 ALGTPNNEVWPEVESLQDYKSTFPKWKPGSLASHVKNLDENGLDLLSKMLIYDPAKRISGKMALNHPYFNDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_RAT (Cell division control protein 2 homolog OS=Rattus norvegicus GN=Cdc2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            A GTPN + WP V SL D+K+ FPKW    L + V+NL+  G+DLLSKML  DP++RI+ K AL+H YF D+
Sbjct:  219 ALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLVYDPAKRISGKMALKHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_PONAB (Cell division control protein 2 homolog OS=Pongo abelii GN=CDC2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            A GTPN + WP V SL D+K+ FPKW    L + V+NL+  G+DLLSKML  DP++RI+ K AL H YF D+
Sbjct:  219 ALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLIYDPAKRISGKMALNHPYFNDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_MOUSE (Cell division control protein 2 homolog OS=Mus musculus GN=Cdc2 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            A GTPN + WP V SL D+K+ FPKW    L + V+NL+  G+DLLSKML  DP++RI+ K AL+H YF D+
Sbjct:  219 ALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLVYDPAKRISGKMALKHPYFDDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_HUMAN (Cell division control protein 2 homolog OS=Homo sapiens GN=CDC2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.022e-17
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 ARGTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            A GTPN + WP V SL D+K+ FPKW    L + V+NL+  G+DLLSKML  DP++RI+ K AL H YF D+
Sbjct:  219 ALGTPNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDENGLDLLSKMLIYDPAKRISGKMALNHPYFNDL 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_DROME (Cell division control protein 2 homolog OS=Drosophila melanogaster GN=cdc2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 2
Query:   11 TPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            TP ED WPGVTSLPD+K+ FP W + +L   ++NL+  GIDL+ KML  DP  RI+AK  LEH YF
Sbjct:  222 TPTEDIWPGVTSLPDYKNTFPCWSTNQLTNQLKNLDANGIDLIQKMLIYDPVHRISAKDILEHPYF 287          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_AJECA (Cell division control protein 2 OS=Ajellomyces capsulata GN=CDC2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFK 211
            GTP+E+TWPGVTS PDFK++FPKW  ++   +V  LE  G+DLL  ML  DP+RRI+AK A  H YF+
Sbjct:  241 GTPDENTWPGVTSFPDFKASFPKWKREDTRKLVPGLERNGLDLLDAMLEYDPARRISAKQACMHPYFQ 308          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK3_MOUSE (Cell division protein kinase 3 OS=Mus musculus GN=Cdk3 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.288e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP+E TWPGV+ +PD++S+FPKW  K L  +V +L P G DLL ++L  DPS+RI+AK+AL H YF
Sbjct:  219 GTPSEATWPGVSQMPDYQSSFPKWSRKGLEEIVPSLGPEGKDLLLRLLQYDPSQRISAKTALAHPYF 285          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+AK+AL H +F+DV
Sbjct:  220 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 289          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK2_MOUSE (Cell division protein kinase 2 OS=Mus musculus GN=Cdk2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.989e-16
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTP+E  WPGVTS+PD+K +FPKW  ++   VV  L+  G  LLS+ML  DP++RI+AK+AL H +F+DV
Sbjct:  268 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV 337          
The following BLAST results are available for this feature:
BLAST of FC929435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CDC2_BOVIN2.703e-1755.56Cell division control protein 2 homolog OS=Bos tau... [more]
CDC2_RAT6.022e-1754.17Cell division control protein 2 homolog OS=Rattus ... [more]
CDC2_PONAB6.022e-1754.17Cell division control protein 2 homolog OS=Pongo a... [more]
CDC2_MOUSE6.022e-1754.17Cell division control protein 2 homolog OS=Mus mus... [more]
CDC2_HUMAN6.022e-1754.17Cell division control protein 2 homolog OS=Homo sa... [more]
CDC2_DROME1.027e-1657.58Cell division control protein 2 homolog OS=Drosoph... [more]
CDC2_AJECA1.027e-1657.35Cell division control protein 2 OS=Ajellomyces cap... [more]
CDK3_MOUSE2.288e-1656.72Cell division protein kinase 3 OS=Mus musculus GN=... [more]
CDK2_RAT2.989e-1654.29Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_MOUSE2.989e-1654.29Cell division protein kinase 2 OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929435 ID=FC929435; Name=FC929435; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAAAAGTGCTCTAGAACATG
AATACTTCAAGGACGTCTAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAAAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAATGATGTT
CCTGGTGCGCATGAACGGCTGCCTGAAGGTGCGGA
back to top