FC929435

Overview
NameFC929435
Unique NameFC929435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CKB22_ARATH (Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.696e-16
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE+ WPGV+ L D+   +P+W    L T V NL+ AG+DLLSKML  +P++RI+AK A+EH YF D+
Sbjct:  241 GTPNEEVWPGVSKLKDWHE-YPQWKPLSLSTAVPNLDEAGLDLLSKMLEYEPAKRISAKKAMEHPYFDDL 309          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK2_XENLA (Cell division protein kinase 2 OS=Xenopus laevis GN=cdk2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTP+E +WPGVT++PD+KS FPKW  ++   VV  L+  G DLL++ML  D ++RI+AK AL H +F+DV
Sbjct:  220 GTPDEVSWPGVTTMPDYKSTFPKWIRQDFSKVVPPLDEDGRDLLAQMLQYDSNKRISAKVALTHPFFRDV 289          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_SCHPO (Cell division control protein 2 OS=Schizosaccharomyces pombe GN=cdc2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPNE+ WPGVT L D+KS FP+W   +L  VV N E   I+LLS ML  DP+ RI+AK AL+  Y +D
Sbjct:  227 GTPNEEVWPGVTLLQDYKSTFPRWKRMDLHKVVPNGEEDAIELLSAMLVYDPAHRISAKRALQQNYLRD 295          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2_DICDI (Cell division control protein 2 homolog OS=Dictyostelium discoideum GN=cdk1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTP++  WPGVT LP++ S FP WP +    +    EP  +DL++KML  +PS+RI+AK AL H YF D+
Sbjct:  222 GTPDDSIWPGVTKLPEYVSTFPNWPGQPYNKIFPRCEPLALDLIAKMLQYEPSKRISAKEALLHPYFGDL 291          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CC2H2_TRYBB (Cell division control protein 2 homolog 2 OS=Trypanosoma brucei brucei GN=CRK2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.305e-15
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTP E TW GVTSLP     FP+W +K L T V  L+  G+DLL +MLC +P  RITA  AL+H YF +V
Sbjct:  262 GTPTEATWRGVTSLPHHNVNFPRWTAKPLRTAVPALDDDGVDLLRRMLCYNPRERITAYEALQHSYFDEV 331          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CKB21_ARATH (Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE+ WPGV++L ++   +P+W    L + V NL+ AG+DLLSKML  +P++RI+AK A+EH YF D+
Sbjct:  239 GTPNEEMWPGVSTLKNWHE-YPQWKPSTLSSAVPNLDEAGVDLLSKMLQYEPAKRISAKMAMEHPYFDDL 307          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP E+ WPGVT L D+   FP+W  + L   V +LEP G+DLLSKML  +P+ RI+AK+A+EH YF
Sbjct:  230 GTPTEEQWPGVTDLRDWHE-FPQWKPQILERQVPSLEPEGVDLLSKMLQYNPANRISAKAAMEHPYF 295          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAVI (Cell division control protein 2 homolog OS=Plasmodium vivax GN=CRK2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN + WP VT LP +   F  +      T ++ L+  GIDLLSKML +DP++RITAK ALEH YFK+
Sbjct:  218 GTPNSENWPNVTELPKYDPDFMVYEPLPWETFLKGLDDTGIDLLSKMLRLDPNQRITAKQALEHAYFKE 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CKB21_ORYSJ (Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp. japonica GN=CDKB2-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE  WPGV+ LP++   +P+W   ++  +V  L+   +DLL KML  +PS+RI+AK A+EH YF DV
Sbjct:  253 GTPNEQVWPGVSKLPNWHE-YPQWNPSKVSDLVHGLDADALDLLEKMLQYEPSKRISAKKAMEHPYFNDV 321          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAYO (Cell division control protein 2 homolog OS=Plasmodium yoelii yoelii GN=CRK2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN   WP V  LP +   FP +      T ++ L+  GIDLLSKML +DP++RITAK A+EH YFK+
Sbjct:  219 GTPNSQNWPDVFKLPKYDPNFPVYEPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEHPYFKE 287          
The following BLAST results are available for this feature:
BLAST of FC929435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CKB22_ARATH8.696e-1654.29Cyclin-dependent kinase B2-2 OS=Arabidopsis thalia... [more]
CDK2_XENLA1.937e-1552.86Cell division protein kinase 2 OS=Xenopus laevis G... [more]
CDC2_SCHPO2.530e-1555.07Cell division control protein 2 OS=Schizosaccharom... [more]
CDC2_DICDI3.305e-1548.57Cell division control protein 2 homolog OS=Dictyos... [more]
CC2H2_TRYBB3.305e-1554.29Cell division control protein 2 homolog 2 OS=Trypa... [more]
CKB21_ARATH5.637e-1551.43Cyclin-dependent kinase B2-1 OS=Arabidopsis thalia... [more]
CKB11_ORYSJ6.232e-1455.22Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp... [more]
CDC2H_PLAVI6.232e-1452.17Cell division control protein 2 homolog OS=Plasmod... [more]
CKB21_ORYSJ8.139e-1448.57Cyclin-dependent kinase B2-1 OS=Oryza sativa subsp... [more]
CDC2H_PLAYO8.139e-1450.72Cell division control protein 2 homolog OS=Plasmod... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929435 ID=FC929435; Name=FC929435; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAAAAGTGCTCTAGAACATG
AATACTTCAAGGACGTCTAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAAAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAATGATGTT
CCTGGTGCGCATGAACGGCTGCCTGAAGGTGCGGA
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