FC929435

Overview
NameFC929435
Unique NameFC929435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLACH (Cell division control protein 2 homolog OS=Plasmodium chabaudi GN=CRK2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.139e-14
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN   WP V  LP +   FP +      T ++ L+  GIDLLSKML +DP++RITAK A+EH YFK+
Sbjct:  218 GTPNSQNWPDVFKLPKYDPNFPVYEPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEHPYFKE 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLABA (Cell division control protein 2 homolog OS=Plasmodium berghei (strain Anka) GN=CRK2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.063e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN   WP V  LP +   FP +      T ++ L+  GIDLLSKML +DP++RITAK A+EH YFK+
Sbjct:  218 GTPNSQNWPDVFKLPKYDPNFPVYNPLPWETFIKGLDDTGIDLLSKMLKLDPNQRITAKQAIEHPYFKE 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2D_ANTMA (Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.813e-13
Identity = 33/70 (47.14%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE+ WPGV++L D+   +P+W ++ + + V  L+  G++LLS+ML  +PSRRI+AK A+EH YF ++
Sbjct:  239 GTPNEEIWPGVSTLVDWHE-YPQWTAQPISSAVPGLDEKGLNLLSEMLHYEPSRRISAKKAMEHPYFDEL 307          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAFK (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CRK2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN   WP VT LP +   F  +      + ++ L+ +GIDLLSKML +DP++RITAK ALEH YFK+
Sbjct:  218 GTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAF7 (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate 3D7) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.368e-13
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN   WP VT LP +   F  +      + ++ L+ +GIDLLSKML +DP++RITAK ALEH YFK+
Sbjct:  218 GTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP E  WPGV++L D+   +PKW  ++L   V +L P G+DLL+KML  +P+ RI+AK+AL+H YF
Sbjct:  236 GTPTEQQWPGVSTLRDWH-VYPKWEPQDLTLAVPSLSPQGVDLLTKMLKYNPAERISAKTALDHPYF 301          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_THEAN (Cell division control protein 2 homolog OS=Theileria annulata GN=CRK2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPN D+WP V +LP +   F  +  +   ++V  L  +GIDL+S+ML +DP +RI+AK AL+H+YFKD+
Sbjct:  218 GTPNVDSWPQVVNLPAYNPDFCYYEKQAWSSIVPKLNESGIDLISRMLQLDPVQRISAKEALKHDYFKDL 287          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAKH (Cell division control protein 2 homolog OS=Plasmodium knowlesi (strain H) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPN   WP VT LP +   F  +      T ++ L+  GIDLLSKML +DP++RITAK AL+H YFK+
Sbjct:  218 GTPNSANWPSVTELPKYDPDFIVYEPLPWETFLKGLDDTGIDLLSKMLRLDPNQRITAKEALQHAYFKE 286          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CC2H3_TRYBB (Cell division control protein 2 homolog 3 OS=Trypanosoma brucei brucei GN=CRK3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.276e-13
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 2
Query:    8 GTPN--EDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*F 223
            GTP   E +W GV+SLPD++  FPKW  K L  V+  L+   +DLLS+ML  +P+ RI+AK+AL+H +F D  F
Sbjct:  238 GTPMDAEGSWLGVSSLPDYRDVFPKWSGKPLTQVLPTLDGDAVDLLSQMLRYNPAERISAKAALQHPWFSDAMF 311          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP E  WPGV +L D+   +PKW  ++L   V +L P GIDLL++ML  +P+ RI+AK+AL+H YF
Sbjct:  238 GTPTEQQWPGVMALRDWH-VYPKWEPQDLSRAVPSLSPEGIDLLTQMLKYNPAERISAKAALDHPYF 303          
The following BLAST results are available for this feature:
BLAST of FC929435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CDC2H_PLACH8.139e-1450.72Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLABA1.063e-1350.72Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2D_ANTMA1.813e-1347.14Cell division control protein 2 homolog D OS=Antir... [more]
CDC2H_PLAFK2.368e-1350.72Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAF72.368e-1350.72Cell division control protein 2 homolog OS=Plasmod... [more]
CKB11_ARATH3.093e-1350.75Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia... [more]
CDC2H_THEAN5.276e-1347.14Cell division control protein 2 homolog OS=Theiler... [more]
CDC2H_PLAKH5.276e-1350.72Cell division control protein 2 homolog OS=Plasmod... [more]
CC2H3_TRYBB5.276e-1348.65Cell division control protein 2 homolog 3 OS=Trypa... [more]
CKB12_ARATH6.890e-1350.75Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929435 ID=FC929435; Name=FC929435; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAAAAGTGCTCTAGAACATG
AATACTTCAAGGACGTCTAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAAAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAATGATGTT
CCTGGTGCGCATGAACGGCTGCCTGAAGGTGCGGA
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