FC929435

Overview
NameFC929435
Unique NameFC929435
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12114 contig Ccv1_Contig12114:965..1499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2H_THEPA (Cell division control protein 2 homolog OS=Theileria parva GN=CRK2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV*FVP*YL 238
            GTP+ D+WP V +LP +   F  +  +   ++V  L  +GIDL+S+ML +DP +RI+AK AL+H+YFKD+   P +L
Sbjct:  218 GTPSVDSWPQVVNLPAYNPDFSYYEKQSWSSIVPKLNESGIDLISRMLQLDPVQRISAKEALKHDYFKDLHRPPEFL 294          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2C_DROME (Cell division control protein 2 cognate OS=Drosophila melanogaster GN=cdc2c PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.890e-13
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   11 TPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            TP+E  WPGVT LPDFK+ FP+W    +   +   E    +L+  MLC DP+ RI+AK AL+H YF++V
Sbjct:  224 TPDETNWPGVTQLPDFKTKFPRWEGTNMPQPI--TEHEAHELIMSMLCYDPNLRISAKDALQHAYFRNV 290          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDK2_ENTHI (Cell division protein kinase 2 homolog OS=Entamoeba histolytica GN=CDC2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP ED W GVT LP + S FPKW +K+L T+    E A +DLL KM    P +RI+A  AL+H +F
Sbjct:  218 GTPTEDIWNGVTKLPFYLSTFPKWKAKDLHTIFHTDERA-VDLLQKMFIYTPEKRISAADALKHPFF 283          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC2C_ANTMA (Cell division control protein 2 homolog C OS=Antirrhinum majus GN=CDC2C PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.299e-11
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP+++ WPGV+SL D+   +P+W  +     V +L P G+DLL+K L  DP+ RI+AK+AL+H YF
Sbjct:  232 GTPSDEQWPGVSSLRDWH-VYPQWEPQNSAPAVPSLGPDGLDLLTKTLKYDPADRISAKAALDHPYF 297          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: PHO85_DEBHA (Negative regulator of the PHO system OS=Debaryomyces hansenii GN=PHO85 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKDV 217
            GTPNE TWPGV+S  +FK+ +  +  ++L  ++ NL+  G++LLS +L M P  RITA+ AL+H +F ++
Sbjct:  224 GTPNERTWPGVSSYANFKNNWQIFVPQDLRLLIPNLDSMGLNLLSSLLQMRPDARITARQALQHPWFHEI 293          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: PHO85_YARLI (Negative regulator of the PHO system OS=Yarrowia lipolytica GN=PHO85 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 27/69 (39.13%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFKD 214
            GTPNE TWP ++SLP+++S F  +  ++L  ++  ++   +DLL  +L + P  RITA+ +LEH +F +
Sbjct:  223 GTPNESTWPNISSLPNYRSNFQVYAPQDLRVIIPQIDNVALDLLLSLLQLKPENRITARQSLEHPWFAE 291          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: PEF1_SCHPO (Serine/threonine-protein kinase pef1 OS=Schizosaccharomyces pombe GN=pef1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYF 208
            GTP E +WPG++ LP++K  FP + +++L  +    +P G+DLL +ML + P  R T + AL+H +F
Sbjct:  219 GTPTEQSWPGISLLPEYKPTFPIYKAQDLAYLFPTFDPLGLDLLRRMLRLQPELRTTGQDALQHAWF 285          
BLAST of FC929435 vs. ExPASy Swiss-Prot
Match: CDC28_ENCCU (Probable cell division control protein 28 homolog OS=Encephalitozoon cuniculi GN=CDC28 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 2
Query:    8 GTPNEDTWPGVTSLPDFKSAFPKWPSKELGTVVRNLEPAGIDLLSKMLCMDPSRRITAKSALEHEYFK 211
            GTPN   W  V + P++K  FP W   +L T+ R  +P  +DL+SKML  DP  R+TAK+ L H+YF+
Sbjct:  223 GTPNNSRWSNVENFPNYKVEFPVWDPVDLKTIFRG-DPDFVDLISKMLEYDPKMRMTAKNGLSHKYFE 289          
The following BLAST results are available for this feature:
BLAST of FC929435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CDC2H_THEPA6.890e-1344.16Cell division control protein 2 homolog OS=Theiler... [more]
CDC2C_DROME6.890e-1347.83Cell division control protein 2 cognate OS=Drosoph... [more]
CDK2_ENTHI4.466e-1250.75Cell division protein kinase 2 homolog OS=Entamoeb... [more]
CDC2C_ANTMA1.299e-1147.76Cell division control protein 2 homolog C OS=Antir... [more]
PHO85_DEBHA1.697e-1144.29Negative regulator of the PHO system OS=Debaryomyc... [more]
PHO85_YARLI3.781e-1139.13Negative regulator of the PHO system OS=Yarrowia l... [more]
PEF1_SCHPO3.781e-1140.30Serine/threonine-protein kinase pef1 OS=Schizosacc... [more]
CDC28_ENCCU3.781e-1145.59Probable cell division control protein 28 homolog ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CB01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929435 ID=FC929435; Name=FC929435; organism=Citrus clementina; type=EST; length=535bp
GGCACGAGGAACACCTAATGAGGACACATGGCCTGGAGTGACTTCATTGC
CTGACTTTAAATCTGCCTTTCCTAAATGGCCTTCTAAGGAGTTGGGGACT
GTTGTTCGAAATCTTGAGCCAGCTGGCATTGATCTCCTTTCTAAAATGCT
CTGCATGGATCCAAGCAGAAGAATTACTGCCAAAAGTGCTCTAGAACATG
AATACTTCAAGGACGTCTAATTTGTACCCTAATATCTGTTGTATATGCTA
TTAAAGTGTTGACATTATTGTGAAGCCTTCGGTTTTGATTGTTTGCGAAA
TTTGCCGACTGTCTTTACTTGCAGTTTTACTGAAAAGTCTTACTACATGG
AATGGCTTTTTACAGTCATCTCTGGATTTGCCTAGTTTGTAATCGTGTAT
TCGCGGCTTTCTTGATCTTGTGGATAAATGTTTGTGCCAGTTTTTCTTTT
AATATTTGATATGTAATACACCAAATTGAATTTGTTGTTCGAATGATGTT
CCTGGTGCGCATGAACGGCTGCCTGAAGGTGCGGA
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