FC929451

Overview
NameFC929451
Unique NameFC929451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROMM (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROM9 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROM2 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROM1 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain NATL1A) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ L+D+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   40 ILTSLEDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 179
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROM0 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_MICAN (NAD(P)H-quinone oxidoreductase subunit K OS=Microcystis aeruginosa (strain NIES-843) GN=ndhK PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 60/140 (42.86%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ +DD+ N+ R  S+WPM +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y++MP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA++  I++L+KK+
Sbjct:   38 ILTTVDDLYNWARLSSLWPMLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKV 177
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_SYNP6 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA++  I++L+KK+
Sbjct:   27 ILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_SYNE7 (NAD(P)H-quinone oxidoreductase subunit K OS=Synechococcus elongatus (strain PCC 7942) GN=ndhK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++ AGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA++  I++L+KK+
Sbjct:   27 ILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKV 166
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROMP (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 IMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
[Close]
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDHK_PROM5 (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhK PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 61/140 (43.57%), Postives = 98/140 (70.00%), Query Frame = 1 
Query:  319 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 735
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMP+P++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 IMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
The following BLAST results are available for this feature:
BLAST of FC929451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK_PROMM3.568e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM93.568e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM23.568e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM13.568e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM03.568e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_MICAN3.568e-3342.86NAD(P)H-quinone oxidoreductase subunit K OS=Microc... [more]
NDHK_SYNP64.659e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_SYNE74.659e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Synech... [more]
NDHK_PROMP4.659e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]
NDHK_PROM54.659e-3343.57NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929451 ID=FC929451; Name=FC929451; organism=Citrus clementina; type=EST; length=827bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCTTTGGCAG
TTACACTCGACTATTATGTACTAATAA
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