FC929451

Overview
NameFC929451
Unique NameFC929451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929451_ssr222 microsatellite FC929451_ssr222:222..233. BLAST: Citrus ESTs to Populus V2 proteins
FC929451_ssr47 microsatellite FC929451_ssr47:47..66. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:49..876. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP1 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1710b) GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP0 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1106a) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMS (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain SAVP1) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMA (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM9 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10229) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM7 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10247) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 741
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NDUS7_NEUCR (NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial OS=Neurospora crassa GN=G17A4.170 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.077e-57
Identity = 103/159 (64.78%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  295 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYWWTK 771
            G     ++ ++ LD +VN+ R+ S+WPM+FGLACCAVEMMH    RYD DR GIIFR SPRQSDVM+VAGTLTNKMAPALR+VYDQMPDPRWVISMGSCAN              CDRIVPVDIYVPGCPPT+EAL+YGI QLQ+KM   +    W+ K
Sbjct:   68 GTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKITRMWYRK 226          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB_FRATW (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.713e-57
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB_FRATT (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.713e-57
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
BLAST of FC929451 vs. ExPASy Swiss-Prot
Match: NUOB_FRATO (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.713e-57
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:  316 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 744
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R+
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRK 152          
The following BLAST results are available for this feature:
BLAST of FC929451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_BURP12.077e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP02.077e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURMS2.077e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURMA2.077e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURM92.077e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURM72.077e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NDUS7_NEUCR2.077e-5764.78NADH-ubiquinone oxidoreductase 19.3 kDa subunit, m... [more]
NUOB_FRATW2.713e-5770.63NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATT2.713e-5770.63NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATO2.713e-5770.63NADH-quinone oxidoreductase subunit B OS=Francisel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929451 ID=FC929451; Name=FC929451; organism=Citrus clementina; type=EST; length=827bp
AACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAAAC
CAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAAAA
AAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGCGC
CTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTCCC
CTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCCCA
CCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTATC
TCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAACTA
TATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTGCG
CCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGATTC
GGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTAGC
TGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATC
AAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATGGT
GGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGAT
TGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCC
TACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGAT
TTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCTTTGGCAG
TTACACTCGACTATTATGTACTAATAA
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