FC929465

Overview
NameFC929465
Unique NameFC929465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15018 contig Ccv1_Contig15018:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_OLILU (Histone H4 OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.040e-35
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_SOLLC (Histone H4 OS=Solanum lycopersicum PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_SOLCH (Histone H4 OS=Solanum chacoense PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_CAPAN (Histone H4 OS=Capsicum annuum PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_XENTR (Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_XENLA (Histone H4 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_XENBO (Histone H4 OS=Xenopus borealis PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_URECA (Histone H4 OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_TIGCA (Histone H4 OS=Tigriopus californicus GN=His4 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_RHYAM (Histone H4 OS=Rhynchosciara americana GN=His4 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.316e-35
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of FC929465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_OLILU1.040e-3594.94Histone H4 OS=Olisthodiscus luteus PE=1 SV=2[more]
H4_SOLLC1.773e-3594.94Histone H4 OS=Solanum lycopersicum PE=3 SV=2[more]
H4_SOLCH1.773e-3594.94Histone H4 OS=Solanum chacoense PE=3 SV=3[more]
H4_CAPAN1.773e-3594.94Histone H4 OS=Capsicum annuum PE=3 SV=3[more]
H4_XENTR2.316e-3593.67Histone H4 OS=Xenopus tropicalis GN=TGas006m08.1 P... [more]
H4_XENLA2.316e-3593.67Histone H4 OS=Xenopus laevis PE=1 SV=2[more]
H4_XENBO2.316e-3593.67Histone H4 OS=Xenopus borealis PE=3 SV=2[more]
H4_URECA2.316e-3593.67Histone H4 OS=Urechis caupo PE=3 SV=2[more]
H4_TIGCA2.316e-3593.67Histone H4 OS=Tigriopus californicus GN=His4 PE=3 ... [more]
H4_RHYAM2.316e-3593.67Histone H4 OS=Rhynchosciara americana GN=His4 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929465 ID=FC929465; Name=FC929465; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCGCCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCCGG
GTGGGGTGAAGCGTATCAATGGGTTGATCTACTAAGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTAAA
ATGGGAATCTTGGTGTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGACTAGAATTGACGAGAGATCGTTGTGAATCTT
CTTGGTATAAAAAACAAAAAAAAAAA
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