FC929465

Overview
NameFC929465
Unique NameFC929465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15018 contig Ccv1_Contig15018:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.961e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.961e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.561e-34
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTY EHA+RKTVT+MDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTSMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of FC929465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PSAMI1.149e-3492.41Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC1.149e-3492.41Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR1.149e-3492.41Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI1.149e-3492.41Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI1.149e-3492.41Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU1.149e-3492.41Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL1.149e-3492.41Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_APLCA1.961e-3492.41Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK1.961e-3492.41Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]
H4_SOLST2.561e-3491.14Histone H4 OS=Solaster stimpsoni PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929465 ID=FC929465; Name=FC929465; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCGCCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCCGG
GTGGGGTGAAGCGTATCAATGGGTTGATCTACTAAGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTAAA
ATGGGAATCTTGGTGTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGACTAGAATTGACGAGAGATCGTTGTGAATCTT
CTTGGTATAAAAAACAAAAAAAAAAA
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