FC929465

Overview
NameFC929465
Unique NameFC929465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15018 contig Ccv1_Contig15018:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.561e-34
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+F +NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_PHYPO (Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 73/79 (92.41%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+  IY ETRGVLK FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISNTIYEETRGVLKTFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_MORAP (Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_CHLRE (Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLK+FLENVIRDAVTYTEH +RKTVTAMDVVYALK QGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_VOLCA (Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.730e-34
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_EIMTE (Histone H4 OS=Eimeria tenella PE=3 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 9.730e-34
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY E RGVLK+FLEN+I+D+VTYTEHARRKTVTAMD+VY+LKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEEIRGVLKVFLENIIKDSVTYTEHARRKTVTAMDIVYSLKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_PHACH (Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.660e-33
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 382
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRTLYGFG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRTLYGFG 102
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_AGABI (Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.660e-33
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 382
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRTLYGFG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRTLYGFG 102
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_ASCSU (Histone H4 OS=Ascaris suum PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.168e-33
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY ETR VLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALK QGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKHQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of FC929465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_DIAPU2.561e-3491.14Histone H4 OS=Diadromus pulchellus PE=3 SV=3[more]
H4_PHYPO5.704e-3492.41Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV... [more]
H4_MORAP5.704e-3489.87Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3[more]
H4_CHLRE5.704e-3492.41Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE... [more]
H4_APIME5.704e-3491.14Histone H4 OS=Apis mellifera PE=3 SV=3[more]
H4_VOLCA9.730e-3492.41Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2[more]
H4_EIMTE9.730e-3487.34Histone H4 OS=Eimeria tenella PE=3 SV=3[more]
H4_PHACH1.660e-3391.03Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 ... [more]
H4_AGABI1.660e-3391.03Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2[more]
H4_ASCSU2.168e-3389.87Histone H4 OS=Ascaris suum PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929465 ID=FC929465; Name=FC929465; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCGCCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCCGG
GTGGGGTGAAGCGTATCAATGGGTTGATCTACTAAGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTAAA
ATGGGAATCTTGGTGTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGACTAGAATTGACGAGAGATCGTTGTGAATCTT
CTTGGTATAAAAAACAAAAAAAAAAA
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