FC929465

Overview
NameFC929465
Unique NameFC929465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15018 contig Ccv1_Contig15018:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.835e-32
Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+ L+Y ETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVY+LKRQGRT+YGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY E R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.130e-32
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+ LIY ETR VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.973e-32
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY E R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 6.973e-32
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            DNIQGITKPAIRRLAR GGVKRI+GLIY + R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   25 DNIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.315e-30
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            + I GITKPAIRRLAR GGVKRI+ LIY ETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   26 ETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 104
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.315e-30
Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 2 
Query:  149 DNIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            + I GITKPAIRRLAR GGVKRI+ LIY ETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   26 ETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 104
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.718e-30
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 2 
Query:  152 NIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +I+GITKPAIRRLAR GGVKRI+  IY ++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.718e-30
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 2 
Query:  152 NIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +I+GITKPAIRRLAR GGVKRI+  IY ++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC929465 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.718e-30
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 2 
Query:  152 NIQGITKPAIRRLARPGGVKRINGLIY*ETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +I+GITKPAIRRLAR GGVKRI+  IY ++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of FC929465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SCHPO1.835e-3284.81Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE... [more]
H4_CANGA3.130e-3287.34Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD3.130e-3287.34Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST6.973e-3286.08Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO6.973e-3286.08Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H4_STYLE1.315e-3083.54Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO1.315e-3083.54Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H4_TETTH1.718e-3084.62Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY1.718e-3084.62Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY1.718e-3084.62Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CD12RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929465 ID=FC929465; Name=FC929465; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCGCCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCCGG
GTGGGGTGAAGCGTATCAATGGGTTGATCTACTAAGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTAAA
ATGGGAATCTTGGTGTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGACTAGAATTGACGAGAGATCGTTGTGAATCTT
CTTGGTATAAAAAACAAAAAAAAAAA
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