FC929471

Overview
NameFC929471
Unique NameFC929471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKD2_ARATH (Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.660e-51
Identity = 105/196 (53.57%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +Y + + +GEGTYGVVYKA +  T +T+A+KKIRL  + EGV  TA+REI LLKE+ H +IV L D    +  L+LVFEY+  DL+  +     F + P  IK+++   L+G+AYCH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L GSR Y   VDVW+ GCIFAE++
Sbjct:   12 RYLRRQILGEGTYGVVYKATDTKTGKTVAVKKIRLGNQKEGVNFTALREIKLLKELNHPHIVELIDAFPHDGSLHLVFEYMQTDLEAVIRDRNIFLS-PGDIKSYMLMTLKGLAYCHKKWVLHRDMKPNNLLIG-ENGLLKLADFGLARLFGSPNRRFTHQVFATWYRAPELLFGSRQYGAGVDVWAAGCIFAELL 205          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.831e-51
Identity = 111/225 (49.33%), Postives = 146/225 (64.89%), Query Frame = 1
Query:  205 SPSVGSK----YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS-----------------EKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR-TFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN 813
            SPS GS+    +EK+E+IGEGTYG VY A+   TNE +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V S                 +  +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR+F        T+ V+TLWYR PE+LLGS  Y   VD+WSVGCIFAE++N
Sbjct:   14 SPSWGSRSVDCFEKLEQIGEGTYGQVYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLADR-PGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGN-LKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRYGPAVDMWSVGCIFAELLN 236          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKD3_ARATH (Cyclin-dependent kinase D-3 OS=Arabidopsis thaliana GN=CDKD-3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 102/206 (49.51%), Postives = 140/206 (67.96%), Query Frame = 1
Query:  193 VPFLSPSVGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +P     V  +Y K E +G+GTYGVV+KA +  T +T+A+KKIRL ++ EGV  TA+REI +LKE++H +I+ L D    ++ L+LVFE+++ DL+  +     F + P  IK++L    +G+AYCH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y   VDVW+V CIFAE++
Sbjct:    1 MPEQPKKVADRYLKQEVLGQGTYGVVFKATDTKTEQTVAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLS-PADIKSYLLMTFKGLAYCHDKWVLHRDMKPNNLLIG-VDGQLKLADFGLARIFGSPNRKFTHQVFARWYRAPELLFGAKQYGAAVDVWAVACIFAELL 204          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKD1_ARATH (Cyclin-dependent kinase D-1 OS=Arabidopsis thaliana GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.076e-50
Identity = 101/199 (50.75%), Postives = 137/199 (68.84%), Query Frame = 1
Query:  214 VGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            V  +Y K E +G+GTYGVV+KA +    ET+A+KKIRL +E EGV  TA+REI LLKE++H +I+ L D    ++ L++VFE+++ DL+  +    +    P  +K++L  IL+G+ YCH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y   VDVW+ GCIFAE++
Sbjct:    7 VADRYLKREVLGQGTYGVVFKATDTKNGETVAIKKIRLGKEKEGVNVTALREIKLLKELKHPHIIELIDAFPHKENLHIVFEFMETDLEAVIRD-RNLYLSPGDVKSYLQMILKGLEYCHGKWVLHRDMKPNNLLIG-PNGQLKLADFGLARIFGSPGRKFTHQVFARWYRAPELLFGAKQYDGAVDVWAAGCIFAELL 203          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.406e-50
Identity = 112/225 (49.78%), Postives = 145/225 (64.44%), Query Frame = 1
Query:  205 SPSVGSK----YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--------------HSEK---KLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR-TFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN 813
            SPS GS+    +EK+E+IGEGTYG VY AR   T E +ALKKIR++ E EG P TAIREI +LK++ H N+++L+++V              H  K    +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR+F        T+ V+TLWYR PE+LLGS  Y   VD+WSVGCIFAE++N
Sbjct:   14 SPSWGSRSVDCFEKLEQIGEGTYGQVYMARETETQEIVALKKIRMDNEREGFPITAIREIKILKKLHHQNVIQLKEIVTSPGPERDEQGKPIHGNKYKGSIYMVFEYMDHDLTGLADR-PGMRFTVPQIKCYMKQLLTGLHYCHINQVLHRDIKGSNLLIDNEGN-LKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLN 236          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.554e-49
Identity = 99/199 (49.75%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  214 VGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            V  +Y K E +GEGTYGVV+KA +  T  T+A+KKIRL +  EGV  TA+REI LLKE++  NI+ L D    +  L+LVFE+++ DL+  +    +    P   K+++  +L+G+A+CH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y + VD+W+ GCIFAE++
Sbjct:   15 VADRYLKREVLGEGTYGVVFKADDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRD-RNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIG-ADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELL 211          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.030e-49
Identity = 99/199 (49.75%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  214 VGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            V  +Y K E +GEGTYGVV+KA +  T  T+A+KKIRL +  EGV  TA+REI LLKE++  NI+ L D    +  L+LVFE+++ DL+  +    +    P   K+++  +L+G+A+CH   VLHRD+KP NLLI      LKLADFGLAR FG P R FTH+V   WYRAPE+L G++ Y + VD+W+ GCIFAE++
Sbjct:   15 VADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVNFTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRD-RNIVLSPADTKSYIQMMLKGLAFCHKKWVLHRDMKPNNLLIG-ADGQLKLADFGLARIFGSPERNFTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELL 211          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDK10_DICDI (Probable cyclin-dependent kinase 10 OS=Dictyostelium discoideum GN=cdk10 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.713e-49
Identity = 103/201 (51.24%), Postives = 141/201 (70.15%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQED-EGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDP---RLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +EK++ IGEGTYG+V K R+  T   +ALKK+++ Q+D +G+P T++REI +LKE++H NIV L +VV   +  K+YLVFEYL+ D+   +D+     N P     IK FL Q+LR + Y HSH ++HRDLK  NLL     N LKLADFGLAR FG P+ + T  +VTLWYR+PE+LLG + YST VD+WS+G IF E++
Sbjct:    7 FEKLDSIGEGTYGIVSKGRDKETGRIVALKKVKIGQQDKDGIPLTSLREIQILKEIKHPNIVSLLEVVIGSTGDKIYLVFEYLEHDVASLIDNI----NKPFKLSEIKCFLLQLLRAVEYLHSHWIIHRDLKCSNLLYGNNGN-LKLADFGLARKFGYPIESITPCMVTLWYRSPELLLGCQKYSTAVDLWSIGSIFGELL 202          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.244e-48
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKK----------------LYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP-VRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN 813
            +EK+E+IGEGTYG VY A+   T E +ALKKIR++ E EG P TAIREI +LK++ H N++ L+++V S  +                +Y+VFEY+D DL    D  P        IK ++ Q+L G+ YCH ++VLHRD+K  NLLID   N LKLADFGLAR++        T+ V+TLWYR PE+LLG+  Y   +D+WSVGCIFAE++N
Sbjct:   26 FEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIHLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLADR-PGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGN-LKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAELLN 236          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDK10_RAT (Cell division protein kinase 10 OS=Rattus norvegicus GN=Cdk10 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.244e-48
Identity = 92/198 (46.46%), Postives = 146/198 (73.74%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV--HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            ++EK+ +IGEGTYG+VY+AR+  T+E +ALKK+R+++E +G+P +++REI+LL  ++H NIV L++VV  +  + ++LV  Y + DL   +++ P   ++ + +K  L Q+LRG+ Y H   ++HRDLK  NLL+  +   +K ADFGLARA+G+PV+  T +VVTLWYRAPE+LLG+   +T +D+W+VGCI AE++
Sbjct:   36 EFEKLNRIGEGTYGIVYRARDTQTDEIVALKKVRMDKEKDGIPISSLREITLLLRLRHPNIVELKEVVVGNHLESIFLVMGYCEQDLASLLENMPTPFSEAQ-VKCILLQVLRGLQYLHRSFIIHRDLKVSNLLMTDK-GCVKTADFGLARAYGVPVKPMTPKVVTLWYRAPELLLGTTTQTTSIDMWAVGCILAELL 231          
The following BLAST results are available for this feature:
BLAST of FC929471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKD2_ARATH1.660e-5153.57Cyclin-dependent kinase D-2 OS=Arabidopsis thalian... [more]
CDKC2_ORYSJ4.831e-5149.33Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDKD3_ARATH1.076e-5049.51Cyclin-dependent kinase D-3 OS=Arabidopsis thalian... [more]
CDKD1_ARATH1.076e-5050.75Cyclin-dependent kinase D-1 OS=Arabidopsis thalian... [more]
CDKC1_ORYSJ1.406e-5049.78Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSI1.554e-4949.75Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSJ2.030e-4949.75Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDK10_DICDI7.713e-4951.24Probable cyclin-dependent kinase 10 OS=Dictyosteli... [more]
CDKC2_ARATH2.244e-4847.89Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDK10_RAT2.244e-4846.46Cell division protein kinase 10 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CE06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929471 ID=FC929471; Name=FC929471; organism=Citrus clementina; type=EST; length=815bp
GGCACGAGGCTAAAACTCACTTCTTTCACCGCCGCCGCTGCCTCCAATCA
CCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATCGTCCTCGCG
TCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCGTAAGCGGTTAAT
TTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCGATTCGTGCCGTT
CTTGTCGCCGTCCGTCGGTAGCAAGTATGAAAAGGTTGAGAAGATTGGTG
AAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAATGAG
ACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTGTGCC
TAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCATGGGA
ACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTATCTG
GTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTTGCCC
AGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAAATTC
TACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGATTTG
AAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGCTTGC
AGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTTACAC
ATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGGATCT
CGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTATATTTGC
TGAGATGGTGAACCA
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