FC929471

Overview
NameFC929471
Unique NameFC929471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKL2_PONAB (Cyclin-dependent kinase-like 2 OS=Pongo abelii GN=CDKL2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.505e-44
Identity = 83/195 (42.56%), Postives = 128/195 (65.64%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM 807
            KYE +  +GEG+YG+V K RN  T   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   ++  P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y   VDVW++GC+  EM
Sbjct:    3 KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-KSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEM 195          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDK12_CAEEL (Putative cell division protein kinase 12 OS=Caenorhabditis elegans GN=cdtl-7 PE=3 SV=4)

HSP 1 Score: 179.874 bits (455), Expect = 1.505e-44
Identity = 96/206 (46.60%), Postives = 130/206 (63.11%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV----------HSEKKLYLVFEYLDLDLKKHMDS--CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM 807
            Y  +++IGEGTYG VYKA N +T E +ALK++RLE E EG P TAIREI +L+++ H NIVRL D+V           +    YLVFEY+D DL   ++S    DF  D   I +   Q+L G+AY H+   LHRD+K  N+L++ +   LK+AD GLAR +    R +T+ V+TLWYR PE+LLG   Y   +DVWS GC+  E+
Sbjct:  311 YTMLDQIGEGTYGQVYKAVNNLTGEQVALKRVRLENEKEGFPITAIREIKILRQLHHKNIVRLMDIVIDDISMDELKRTRANFYLVFEYVDHDLIGLLESKELVDFNKDQ--ICSLFKQLLEGLAYIHNTGFLHRDIKCSNILVNNK-GELKIADLGLARLWEKESRLYTNRVITLWYRPPELLLGDERYGPAIDVWSTGCMLGEL 513          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKL2_RABIT (Cyclin-dependent kinase-like 2 OS=Oryctolagus cuniculus GN=CDKL2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.966e-44
Identity = 82/196 (41.84%), Postives = 130/196 (66.33%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            KYE +  +GEG+YG+V K RN  +   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   ++  P+  +D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y   VDVW++GC+  EM+
Sbjct:    3 KYENLGLVGEGSYGMVMKCRNKDSGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDD-QVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEML 196          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKL2_MACFA (Cyclin-dependent kinase-like 2 OS=Macaca fascicularis GN=CDKL2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.966e-44
Identity = 83/195 (42.56%), Postives = 128/195 (65.64%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM 807
            KYE +  +GEG+YG+V K RN  T   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   ++  P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y   VDVW++GC+  EM
Sbjct:    3 KYENLGLVGEGSYGMVVKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEM 195          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKL2_HUMAN (Cyclin-dependent kinase-like 2 OS=Homo sapiens GN=CDKL2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.966e-44
Identity = 83/195 (42.56%), Postives = 128/195 (65.64%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM 807
            KYE +  +GEG+YG+V K RN  T   +A+KK     +D+ V   A+REI LLK+++H N+V L +V   +K+ YLVFE++D  +   ++  P+   D ++++ +L+QI+ GI +CHSH ++HRD+KP+N+L+  ++  +KL DFG AR    P   +T  V T WYRAPE+L+G   Y   VDVW++GC+  EM
Sbjct:    3 KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVS-QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEM 195          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CTK1_SCHPO (CTD kinase subunit alpha OS=Schizosaccharomyces pombe GN=lsk1 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.568e-44
Identity = 95/197 (48.22%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLK-KHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRT--FTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM 807
            YEK+++IGEGTYG VYKA N VT + +ALK+IRLEQE +G P T +RE+ +L+ ++H NIVRL +++  +  +Y+VFEY+D DL    ++S   F   P  IK    QI   +AY H   VLHRD+K  N+L++   + LK ADFGLAR F    ++  +T+ V+TLW+R PE+LLG   Y T VD+WS GCI  E+
Sbjct:  277 YEKIDQIGEGTYGKVYKAINTVTGDLVALKRIRLEQEKDGFPITTVREVKILQRLRHKNIVRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFT--PGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGD-LKFADFGLAR-FNTSSKSANYTNRVITLWFRPPELLLGETAYDTAVDIWSAGCIVMEL 469          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDK8_DICDI (Probable cyclin-dependent kinase 8 OS=Dictyostelium discoideum GN=cdk8 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.354e-44
Identity = 97/211 (45.97%), Postives = 139/211 (65.88%), Query Frame = 1
Query:  214 VGSKYEKVEKIGEGTYGVVYKARNCVT-NETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS--EKKLYLVFEYLDLDL----KKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLI---DRRTNALKLADFGLARAFGIPVRTFTHE--VVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            V  KY    +IG GTYG+VYKA +    N  +A+KK R  +E EG+  TA REI LLKE+ + NIV+L DV  +  +K LYL+F+Y + DL    K H ++   F++    IK+ ++Q+L GI Y HS+ V+HRDLKP N+L+    +    +K+ DFGLAR F  P++       VVT+WYR+PE+LLGS+HY+  VD+W++GCIFAE++
Sbjct:   40 VQEKYTFSYEIGSGTYGMVYKADDKKRPNNKVAVKKFRSTKEGEGLSLTAYREIGLLKELSNENIVKLLDVCLNPKDKLLYLIFDYAEFDLFGIIKYHRENGSHFSD--ATIKSLIWQVLNGIHYLHSNWVIHRDLKPSNILVMGEGKECGTVKIGDFGLARIFQSPLKPLNENGVVVTIWYRSPELLLGSKHYTRAVDIWAIGCIFAELI 248          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CRK1_SCHPO (Serine/threonine-protein kinase crk1 OS=Schizosaccharomyces pombe GN=crk1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.380e-44
Identity = 90/195 (46.15%), Postives = 127/195 (65.13%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            Y K  K+GEGTY VV+  R   TN  +A+KKI++ Q  +G+  +A+REI  L+E +H N++ L DV  ++  L ++ E+LD DL+  +         P  IK+++  +LRG+ + HS  +LHRDLKP NLLI      LKLADFGL+R FG P    +H+V+T WYR PE+ +G R Y T VD+WSVGCIFAE++
Sbjct:   11 YVKERKVGEGTYAVVFLGRQKETNRRVAIKKIKVGQFKDGIDISALREIKFLRESRHDNVIELVDVFSTKSNLNIILEFLDSDLEMLIKD-KFIVFQPAHIKSWMVMLLRGLHHIHSRFILHRDLKPNNLLIS-SDGVLKLADFGLSRDFGTPSH-MSHQVITRWYRPPELFMGCRSYGTGVDMWSVGCIFAELM 202          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.380e-44
Identity = 93/207 (44.93%), Postives = 136/207 (65.70%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEK----------KLYLVFEYLDLDLKKHMDS-CPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-PVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEM 807
            K++ +  IGEGTYG VYKAR+  T E +ALKK+RL+ E EG P TAIREI +L+++ H ++V ++++V  ++            YLVFEY+D DL   ++S    F+ D   IK+F+ Q++ G+ YCH    LHRD+K  N+L++  +  +KLADFGLAR +     R +T++V+TLWYR PE+LLG   Y+  +DVWS GCI  E+
Sbjct:  726 KFDIIGIIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDH--IKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLN-NSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGEL 929          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: CDKL1_RAT (Cyclin-dependent kinase-like 1 OS=Rattus norvegicus GN=Cdkl1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.720e-44
Identity = 83/197 (42.13%), Postives = 129/197 (65.48%), Query Frame = 1
Query:  223 KYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN 813
            KYEK+ KIGEG+YGVV+K RN  T + +A+K+    ++D  +   A+REI +LK+++H N+V L +V   +++L+LVFEY    +   +D       +P L+K   +Q L+ + +CH H  +HRD+KP+N+LI +  + +KL DFG AR    P   +T  V T WYR+PE+L+G   Y  PVDVW++GC+FAE+++
Sbjct:    3 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKRFLETEDDPVIKKIALREIRMLKQLKHPNLVSLLEVFRRKRRLHLVFEYCHHTVLHELDRYQRGVPEP-LVKNITWQTLQAVNFCHKHNCIHRDVKPENILITKH-SVIKLCDFGFARLLTGPGDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLS 197          
The following BLAST results are available for this feature:
BLAST of FC929471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKL2_PONAB1.505e-4442.56Cyclin-dependent kinase-like 2 OS=Pongo abelii GN=... [more]
CDK12_CAEEL1.505e-4446.60Putative cell division protein kinase 12 OS=Caenor... [more]
CDKL2_RABIT1.966e-4441.84Cyclin-dependent kinase-like 2 OS=Oryctolagus cuni... [more]
CDKL2_MACFA1.966e-4442.56Cyclin-dependent kinase-like 2 OS=Macaca fascicula... [more]
CDKL2_HUMAN1.966e-4442.56Cyclin-dependent kinase-like 2 OS=Homo sapiens GN=... [more]
CTK1_SCHPO2.568e-4448.22CTD kinase subunit alpha OS=Schizosaccharomyces po... [more]
CDK8_DICDI3.354e-4445.97Probable cyclin-dependent kinase 8 OS=Dictyosteliu... [more]
CRK1_SCHPO4.380e-4446.15Serine/threonine-protein kinase crk1 OS=Schizosacc... [more]
CDK12_HUMAN4.380e-4444.93Cell division protein kinase 12 OS=Homo sapiens GN... [more]
CDKL1_RAT5.720e-4442.13Cyclin-dependent kinase-like 1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CE06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929471 ID=FC929471; Name=FC929471; organism=Citrus clementina; type=EST; length=815bp
GGCACGAGGCTAAAACTCACTTCTTTCACCGCCGCCGCTGCCTCCAATCA
CCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATCGTCCTCGCG
TCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCGTAAGCGGTTAAT
TTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCGATTCGTGCCGTT
CTTGTCGCCGTCCGTCGGTAGCAAGTATGAAAAGGTTGAGAAGATTGGTG
AAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAATGAG
ACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTGTGCC
TAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCATGGGA
ACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTATCTG
GTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTTGCCC
AGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAAATTC
TACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGATTTG
AAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGCTTGC
AGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTTACAC
ATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGGATCT
CGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTATATTTGC
TGAGATGGTGAACCA
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