FC929471

Overview
NameFC929471
Unique NameFC929471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length815
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.198e-29
Identity = 75/207 (36.23%), Postives = 123/207 (59.42%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS--EKK----LYLVFEYLD---LDLKKHMDSCPDFANDPRL-IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF--GIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            Y   + IG G++GVVY+A+ C + E +A+KK+  ++  +       RE+ +++++ H NIVRL+   +S  EKK    L LV +Y+      + +H          P + +K ++YQ+ R +AY HS  + HRD+KPQNLL+D  T  LKL DFG A+    G P  ++   + + +YRAPE++ G+  Y++ +DVWS GC+ AE++
Sbjct:   56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKN------RELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTL--PVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY---ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELL 251          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: MK14B_DANRE (Mitogen-activated protein kinase 14B OS=Danio rerio GN=mapk14b PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 77/205 (37.56%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  214 VGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKL------YLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            V  +Y+ +  +G G YG V  A +      +A+KK+    +         RE+ LLK M+H N++ L DV      L      YLV   +  DL  ++  C    +D   ++  +YQILR + Y HS  ++HRDLKP NL ++     LK+ DFGLAR   +     T  V T WYRAPEI+L   HY+  VD+WSVGCI AE++
Sbjct:   21 VPERYQNLSPVGSGAYGSVMSAFDGKAGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFSPATSLEGFNDVYLVTHLMGADLN-NIVKCQKLTDDH--VQFLIYQILRALKYIHSADIIHRDLKPSNLAVNEDCE-LKILDFGLAR---LTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELL 218          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.158e-28
Identity = 74/207 (35.75%), Postives = 123/207 (59.42%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS--EKK----LYLVFEYLD---LDLKKHMDSCPDFANDPRL-IKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAF--GIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            Y   + IG G++GVVY+A+ C + E +A+KK+  ++  +       RE+ +++++ H NIVRL+   +S  EKK    L LV +Y+      + +H          P + +K ++YQ+ R +AY HS  + HRD+KPQNLL+D  T  LKL DFG A+    G P  ++   + + +YRAPE++ G+  Y++ +D+WS GC+ AE++
Sbjct:   56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKN------RELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTL--PVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY---ICSRYYRAPELIFGATDYTSSIDMWSAGCVLAELL 251          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: MK14C_DROME (Putative mitogen-activated protein kinase 14C OS=Drosophila melanogaster GN=p38c PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.512e-28
Identity = 78/202 (38.61%), Postives = 112/202 (55.45%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE-------KKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            YE V  +G G++G V K R   T    A+K++    E E       REI LLK M H N++ L +V H         +++YLV   +D DL ++  S      + R+I   LYQILRG+ Y HS  V+HRDLKP N+ ++  +  +++ DFGL+R   +     T  V T+WY APEI+     Y+  +DVWSVGCI AE++
Sbjct:   20 YEFVRFLGGGSFGQVAKVRLRGTENYFAMKRLMRPFEREEDAKGTYREIRLLKHMNHRNVISLLNVFHPPAHNMMEFQQVYLVTHLMDADLHRYSRSKRMSDQEIRII---LYQILRGLKYIHSAGVVHRDLKPCNIAVNGNSE-VRILDFGLSR---MCADKMTDHVGTMWYLAPEIIFLRGQYTKAIDVWSVGCILAELI 214          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: GSK3_DICDI (Glycogen synthase kinase-3 OS=Dictyostelium discoideum GN=gskA PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.580e-28
Identity = 78/215 (36.28%), Postives = 119/215 (55.35%), Query Frame = 1
Query:  187 RFVPFLSPSVGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHS----EKKLYLVFEYLDLDLKKHMDSCPDFANDPR---LIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +F   +  S G  Y     IG G++GVV +A    T E +A+KK+  +Q  +       RE+ ++K + H NIV L++  ++    E  L LV EY+  D    +      +  P     +K ++YQ+ R I Y HS  + HRD+KPQNLL+D  T+ LKL DFG A+   I   T    + +  YRAPE++ GS +Y+T +DVWS+GC+ AE++
Sbjct:   43 KFDKVIIKSNGVCYITEGVIGNGSFGVVTQAIVADTKEVVAIKKVLQDQRYKN------RELQIMKMLNHINIVSLKNSFYTSDNDEVYLNLVLEYVP-DTVYRVSRHYSMSKQPVPNIFVKLYIYQLCRSINYIHSLGICHRDIKPQNLLLDTSTSTLKLCDFGSAKIL-IKGETNVSYICSRHYRAPELIFGSTNYTTTIDVWSLGCVLAELL 249          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: PMK2_CAEEL (Mitogen-activated protein kinase pmk-2 OS=Caenorhabditis elegans GN=pmk-2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.369e-28
Identity = 79/218 (36.24%), Postives = 111/218 (50.92%), Query Frame = 1
Query:  226 YEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDV------VHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNA----------------LKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVN 813
            Y  ++ +GEG YGVV  A    T + +A+KK     +         RE+ LL+ +QH N++ + DV        S   +Y V   +  DL+  M        D + I+  +YQ+LRG+ Y HS  ++HRDLKP N+ ++ R                    K+ DFGLARA    +   T  V T WYRAPEI+L   HY+  VDVWSVGCI AE+V+
Sbjct:   49 YNSLKPLGEGAYGVVCTAEYEPTGDRVAIKKFFRPFQSTIHAKRTYRELKLLRTLQHDNVLEMIDVFTPDPDASSLNNVYFVSVLMGSDLQNIMKI--QRLTDEQ-IQLLIYQVLRGLKYIHSAGIIHRDLKPSNIAVNERCEVKVFLSFSQLSFLILSFFKILDFGLARAQDAEM---TGYVATRWYRAPEIMLNWMHYTQTVDVWSVGCILAELVS 260          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: MPK17_ARATH (Mitogen-activated protein kinase 17 OS=Arabidopsis thaliana GN=MPK17 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.369e-28
Identity = 82/207 (39.61%), Postives = 119/207 (57.49%), Query Frame = 1
Query:  220 SKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVV-----HSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARA--FGIPVRTF-THEVVTLWYRAPEILLGS--RHYSTPVDVWSVGCIFAEMV 810
            S+Y+  E +G+G+YGVV  A    T   +A+KK+    E        +REI LL+ ++H +IV ++ ++        K +Y+VFE ++ DL   +    D    P+  + FLYQ+LRG+ + HS  V HRDLKP+N+L +     +K+ D GLAR      P   F T  V T WYRAPE L GS   +Y+  +D+WSVGCIFAEM+
Sbjct:   14 SQYQIQEVVGKGSYGVVASAECPHTGGKVAIKKMTNVFEHVSDAIRILREIKLLRLLRHPDIVEIKHIMLPPCRKEFKDIYVVFELMESDLHHVLKVNDDLT--PQHHQFFLYQLLRGLKFMHSAHVFHRDLKPKNILANADCK-IKICDLGLARVSFTDSPSAVFWTDYVATRWYRAPE-LCGSFYSNYTPAIDMWSVGCIFAEML 216          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: MK10_MOUSE (Mitogen-activated protein kinase 10 OS=Mus musculus GN=Mapk10 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.369e-28
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 1
Query:  211 SVGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKL------YLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +V  +Y+ ++ IG G  G+V  A + V +  +A+KK+    +++     A RE+ L+K + H NI+ L +V   +K L      YLV E +D +L + +        D   +   LYQ+L GI + HS  ++HRDLKP N+++ +    LK+ DFGLAR  G      T  VVT +YRAPE++LG   Y   VD+WSVGCI  EMV
Sbjct:   59 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI----QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV-KSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILG-MGYKENVDIWSVGCIMGEMV 257          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: MK10_HUMAN (Mitogen-activated protein kinase 10 OS=Homo sapiens GN=MAPK10 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.369e-28
Identity = 78/206 (37.86%), Postives = 116/206 (56.31%), Query Frame = 1
Query:  211 SVGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKL------YLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +V  +Y+ ++ IG G  G+V  A + V +  +A+KK+    +++     A RE+ L+K + H NI+ L +V   +K L      YLV E +D +L + +        D   +   LYQ+L GI + HS  ++HRDLKP N+++ +    LK+ DFGLAR  G      T  VVT +YRAPE++LG   Y   VD+WSVGCI  EMV
Sbjct:   59 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI----QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVV-KSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILG-MGYKENVDIWSVGCIMGEMV 257          
BLAST of FC929471 vs. ExPASy Swiss-Prot
Match: MK04_HUMAN (Mitogen-activated protein kinase 4 OS=Homo sapiens GN=MAPK4 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.369e-28
Identity = 74/216 (34.26%), Postives = 118/216 (54.63%), Query Frame = 1
Query:  214 VGSKYEKVEKIGEGTYGVVYKARNCVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE-----------KKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHE------VVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMV 810
            +G ++   + +G G  G+V  A +      +A+KKI L   D      A+REI +++ + H NIV++ +V+  +              Y+V EY++ DL + ++         +L   F+YQ+LRG+ Y HS  VLHRDLKP N+ I      LK+ DFGLAR   I  + ++H+      +VT WYR+P +LL   +Y+  +D+W+ GCI AEM+
Sbjct:   16 LGGRFVDFQPLGFGVNGLVLSAVDSRACRKVAVKKIALS--DARSMKHALREIKIIRRLDHDNIVKVYEVLGPKGTDLQGELFKFSVAYIVQEYMETDLARLLEQGTLAEEHAKL---FMYQLLRGLKYIHSANVLHRDLKPANIFISTEDLVLKIGDFGLAR---IVDQHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCILAEML 223          
The following BLAST results are available for this feature:
BLAST of FC929471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSK3B_HUMAN5.198e-2936.23Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
MK14B_DANRE8.866e-2937.56Mitogen-activated protein kinase 14B OS=Danio reri... [more]
GSK3B_RAT1.158e-2835.75Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
MK14C_DROME1.512e-2838.61Putative mitogen-activated protein kinase 14C OS=D... [more]
GSK3_DICDI2.580e-2836.28Glycogen synthase kinase-3 OS=Dictyostelium discoi... [more]
PMK2_CAEEL3.369e-2836.24Mitogen-activated protein kinase pmk-2 OS=Caenorha... [more]
MPK17_ARATH3.369e-2839.61Mitogen-activated protein kinase 17 OS=Arabidopsis... [more]
MK10_MOUSE3.369e-2837.86Mitogen-activated protein kinase 10 OS=Mus musculu... [more]
MK10_HUMAN3.369e-2837.86Mitogen-activated protein kinase 10 OS=Homo sapien... [more]
MK04_HUMAN3.369e-2834.26Mitogen-activated protein kinase 4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CE06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929471 ID=FC929471; Name=FC929471; organism=Citrus clementina; type=EST; length=815bp
GGCACGAGGCTAAAACTCACTTCTTTCACCGCCGCCGCTGCCTCCAATCA
CCTCACTCTTACTCCGGCGATCTCCCCCGTCGGCTTGGATCGTCCTCGCG
TCTGTTACTGTATTATGCATTTGTATTTTTCTCTTTCGTAAGCGGTTAAT
TTTTTCTTCATAACACACTGCCGCCACCTACGCCGTCGATTCGTGCCGTT
CTTGTCGCCGTCCGTCGGTAGCAAGTATGAAAAGGTTGAGAAGATTGGTG
AAGGAACCTATGGAGTAGTTTACAAGGCCCGTAATTGTGTCACGAATGAG
ACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGTGTGCC
TAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCATGGGA
ACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTTATCTG
GTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCTTGCCC
AGATTTTGCTAATGATCCTCGTCTGATAAAAACATTCCTTTATCAAATTC
TACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTTCATCGAGATTTG
AAACCACAAAATTTGCTAATAGATCGTCGTACGAATGCACTAAAGCTTGC
AGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTTACAC
ATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGGATCT
CGCCATTACTCTACTCCAGTTGATGTGTGGTCGGTGGGATGTATATTTGC
TGAGATGGTGAACCA
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