FC929472

Overview
NameFC929472
Unique NameFC929472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 2
Query:   77 GADDSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            G+  S+ +  S  P      DA A A    D KE P  +VF  D+PGLK  ++KV+V+D N+L ISGER RE+E+   K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   27 GSGGSSSSSGSLFPRAN--SDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 142          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +  A A    D KE P ++VF VD+PG+K  ++KV+VED NVL++SGER RE+E    K+ R+ER  GKF+R+F LPE+A VE + A  ++GVLTVTV
Sbjct:   37 ETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTV 134          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.682e-21
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  101 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            K  + PT +   +  A  +T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  GKF R+F LPENA V  + A  ++GVLTVTV
Sbjct:   28 KDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTV 137          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            DA A A    D KE P ++VF  D+PGLK  ++KV+VED NVL ISGER +E+E+   K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   40 DAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 137          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 51/109 (46.79%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  104 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +S+  +  + ++  A A T  D KE P ++VF  D+PGLK  ++KV+VE+  VL ISGER +E+E+   K+ R+E   GKF+R+F LPENANV+ + A  ++GVLTVTV
Sbjct:   34 TSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTV 142          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   86 DSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            D  D+   +    T   D  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   19 DPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTV 133          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   86 DSADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            D  D+   +    T   D  A A    D KE P S+VF  D+PG+K  ++KV+VE+ NVL+ISG+R +E+E    K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   19 DPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTV 133          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +  A A T  D KE P ++VF  D+PGLK  ++KV+VE+D VL ISGER  E+E    K+ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 49/102 (48.04%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  125 TYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            ++ ++  A  +T  D KE P ++VF  D+PGLK  ++KV++EDD VL ISGER  E+E    ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   25 SFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 126          
BLAST of FC929472 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.071e-20
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  107 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            S  P      +  A A    D KE P ++VF  D+PG+K  ++KV+VED NVL ISG+R RE+E+    + R+ER  G+FMRKF LPENA V+ + A  ++GVLTVTV
Sbjct:   38 STVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTV 145          
The following BLAST results are available for this feature:
BLAST of FC929472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS177_ORYSJ2.819e-2147.4617.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT2.819e-2152.0416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP14_SOYBN3.682e-2148.1817.5 kDa class I heat shock protein OS=Glycine max... [more]
HS174_ORYSJ4.809e-2154.0817.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_DAUCA6.281e-2146.7918.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_ORYSJ6.281e-2146.0916.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ6.281e-2146.0916.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP11_SOLPE8.203e-2152.0417.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_MEDSA8.203e-2148.0418.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP11_CHERU1.071e-2048.1518.3 kDa class I heat shock protein OS=Chenopodium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CE07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929472 ID=FC929472; Name=FC929472; organism=Citrus clementina; type=EST; length=778bp
CAAAAGAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTT
CAACTCTGCAGCACATGATGGAGATGGGGGCGGACGACTCCGCTGACAAC
AAGTCATCCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAAT
GGCGGCGACGCCTGCGGACGTGAAGGAGTATCCGAACTCGTACGTGTTCA
TCGTCGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAG
GACGACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAA
AGATGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGA
GGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTG
TGTCAGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGA
GCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAG
AGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCCGGTTG
TTATGAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCT
CCTCTTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTC
TCTCTGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAGGGGAAGC
TGACGGCCGTCTACTGGTAGACATCTAGTTGTTATAATTAATGAAAAATC
CAGCTTTTATCTGAAAAAAAAAAAAAAA
back to top