FC929478

Overview
NameFC929478
Unique NameFC929478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929478_ssr234 microsatellite FC929478_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71D9_SOYBN (Cytochrome P450 71D9 OS=Glycine max GN=CYP71D9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  176 VGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ 463
            VG  L H  L DL+ KYG ++ L++G+ + +VVSSP++AKEV+ T    F SR   +  +I     + + FT YG++WR++R+I  +   ++K VQ
Sbjct:   52 VGSPLPHHRLRDLSAKYGSLMHLKLGEVSTIVVSSPEYAKEVMKTHDHIFASRPYVLAAEIMDYDFKGVAFTPYGDYWRQLRKIFALELLSSKRVQ 147          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A3_PETHY (Flavonoid 3',5'-hydroxylase 2 OS=Petunia hybrida GN=CYP75A3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK---DPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            H +L+ +AKKYG ++ L++G   +VV S+PD AK  L T  + F +R  N          QDMVF  YG  W+ +R++  +     K ++    NW +  A  +  + K   D       +V+   L   M N + +++  +R         N  K +  E    A  F  N GDFIP L
Sbjct:   54 HVSLAKMAKKYGAIMYLKVGTCGMVVASTPDAAKAFLKTLDLNFSNRPPNAGATHLAYGAQDMVFAHYGPRWKLLRKLSNLHMLGGKALE----NWANVRANELGHMLKSMFDMSREGERVVVAEMLTFAMANMIGQVILSKRVFVNKGVEVNEFKDMVVELMTTAGYF--NIGDFIPCL 227          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: F3PH_ARATH (Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 52/178 (29.21%), Postives = 86/178 (48.31%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRR-FESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR LS +   YG +L LR+G  ++VV +S   A++ L      F SR  N          QD+VF  YG  WR +R+I +V  F+ K ++  +   ++E   +  ++ +     T  + L + + + + N + R M  RR F +  D   +  +++  E   LA  F  N GDF+P L
Sbjct:   54 HRTLSAMVTTYGPILHLRLGFVDVVVAASKSVAEQFLKIHDANFASRPPNSGAKHMAYNYQDLVFAPYGHRWRLLRKISSVHLFSAKALEDFKHVRQEEVGTLTRELVR---VGTKPVNLGQLVNMCVVNALGREMIGRRLFGADADHKADEFRSMVTEMMALAGVF--NIGDFVPSL 226          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A7_EUSGR (Flavonoid 3',5'-hydroxylase OS=Eustoma grandiflorum GN=CYP75A7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVV-EDVKKDPEAATNG--IVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            H  L+++AKKYG V+ L++G   L V S+P+ AK  L T  + F +R  N          QDMVF  YG  W+ +R++  +     K +Q     WE+   + +   +    E+  +G  +V+   L   M N + ++M  +R         N  K +  E   +A  F  N GDFIP
Sbjct:   58 HVALANMAKKYGPVMYLKVGSCGLAVASTPEAAKAFLKTLDMNFSNRPPNAGATHLAYNAQDMVFADYGPRWKLLRKLSNIHILGGKALQ----GWEEVRKKELGYMLYAMAESGRHGQPVVVSEMLTYAMANMLGQVMLSKRVFGSQGSESNEFKDMVVELMTVAGYF--NIGDFIP 229          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C75A5_EUSGR (Flavonoid 3',5'-hydroxylase OS=Eustoma grandiflorum GN=CYP75A5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVV-EDVKKDPEAATNG--IVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALNGERSRLAQSFEYNYGDFIP 718
            H  L+++AKKYG V+ L++G   L V S+P+ AK  L T  + F +R  N          QDMVF  YG  W+ +R++  +     K +Q     WE+   + +   +    E+  +G  +V+   L   M N + ++M  +R         N  K +  E   +A  F  N GDFIP
Sbjct:   58 HVALANMAKKYGPVMYLKVGSCGLAVASTPEAAKAFLKTLDMNFSNRPPNAGATHLAYNAQDMVFADYGPRWKLLRKLSNIHILGGKALQ----GWEEVRKKELGYMLYAMAESGRHGQPVVVSEMLTYAMANMLGQVMLSKRVFGSQGSESNEFKDMVVELMTVAGYF--NIGDFIP 229          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71C4_MAIZE (Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.689e-13
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 2
Query:  170 LQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDR-RFESQDDPLFNRLKALN 661
            L +  D+ + +L+ LA +YG D++LLR+G    VVVSSP  A+ VL T    F SR R++V DI      D  F  YG+H+RK R+++TV       V+ QR   E+E    ++ V++   AA   + +   L   + N + R +  +   E   + LF  L  +N
Sbjct:   81 LHLMGDIPYVSLAALATRYGPDLMLLRLGAVPTVVVSSPRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLNASKVRSQRPAREEEVRGALDRVRR-AAAAREPVDMSELLHSFVNNLVCRAVSGKFSMEEGRNRLFRELTDIN 245          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 44/147 (29.93%), Postives = 80/147 (54.42%), Query Frame = 2
Query:  197 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN---GIVLRRRLQLMMYNNMYRIMFDRRFESQD 628
            R  ++ A+ YG ++ +  G    V+VS+ + AKEVL         R R+     F+  G+D+++  YG H+ K+R++ T+  F+ K ++  R   EDE   +V+ V     +  N   GI+LR+ L ++ +NN+ R+ F +RF + +
Sbjct:   50 RCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQLLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVTSMVDSVYNHCTSTENLGKGILLRKHLGVVAFNNITRLAFGKRFVNSE 196          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 37/109 (33.94%), Postives = 65/109 (59.63%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK 520
            HR+L  L+ +YG ++LL  G+  ++VVSS + A E+L T  ++F +R ++         G+D+VF  YGE+WR+M+ +  +   TNK+V       E+E   ++E ++K
Sbjct:   54 HRSLHSLSLRYGPLMLLHFGRVPILVVSSSEAAHEILKTHDLKFANRPKSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKVREEEVNAMMEKLEK 162          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71A6_NEPRA (Cytochrome P450 71A6 (Fragment) OS=Nepeta racemosa GN=CYP71A6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDV----KKDPEAATN 541
            HR+L  L+++YG V+ L  G   ++V SSP+ A+E++  Q + F +R    +         D+ F  YGE+WR++R I  +   +NK VQ  R   E+E + +VE +    K  P AA N
Sbjct:   48 HRSLQSLSRRYGPVMQLHFGSVPVLVASSPEAAREIMKNQDLNFSNRPNLSIPRRLLYDNHDVAFAPYGEYWRQIRSICVLQLLSNKRVQSFRRVREEETSIMVEKIMQLQKTTPTAAVN 167          
BLAST of FC929478 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 47/179 (26.26%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  194 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKALNGERSRLAQSFEYNYGDFIPIL 724
            HR+L  L+ +YG ++LL  G   ++V S+ + A++VL T    F SR R+ +F+    K ++M    YGE+WR+M+ +  +   +NK+V+  +   ++E   ++E ++K      N   L + L  +  + + R+   R++    D   L +RL         + Q   +  G ++P L
Sbjct:   50 HRSLCYLSHRYGPLMLLHFGSVPVIVASTAEAARDVLKTHDRVFASRPRSKIFEKLLYKSRNMASAPYGEYWRQMKSVSVLHLLSNKMVRSFQDVRQEEITLMMETIRKSSSKPVN---LSKILSSLTNDVICRVALGRKYGVGTDFKELIDRL---------MRQLGTFTIGSYVPWL 216          
The following BLAST results are available for this feature:
BLAST of FC929478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
C71D9_SOYBN2.299e-1338.54Cytochrome P450 71D9 OS=Glycine max GN=CYP71D9 PE=... [more]
C75A3_PETHY3.921e-1329.44Flavonoid 3',5'-hydroxylase 2 OS=Petunia hybrida G... [more]
F3PH_ARATH6.689e-1329.21Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana... [more]
C75A7_EUSGR6.689e-1329.78Flavonoid 3',5'-hydroxylase OS=Eustoma grandifloru... [more]
C75A5_EUSGR6.689e-1329.78Flavonoid 3',5'-hydroxylase OS=Eustoma grandifloru... [more]
C71C4_MAIZE6.689e-1333.13Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 S... [more]
C98A2_SOYBN8.736e-1329.93Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C71AI_ARATH8.736e-1333.94Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]
C71A6_NEPRA8.736e-1334.17Cytochrome P450 71A6 (Fragment) OS=Nepeta racemosa... [more]
C71AN_ARATH1.490e-1226.26Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CF02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929478 ID=FC929478; Name=FC929478; organism=Citrus clementina; type=EST; length=805bp
GGCACGAGGATTCATTACGTTAATCGTAAAGATGGATCTCCTCTTGCTGG
AAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCCATTACCGTC
TCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCCCCTCCCCGT
CCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTGAACCATCGGA
ACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCCTCCTCCGCATG
GGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCACGCCAAGGAGGT
TCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAGGAACGTCGTGT
TCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCACAGTGTACGGC
GAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCTTTCTTCACGAA
CAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGAGGCCGCTAGAG
TCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCAATGGGATCGTC
TTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATGTACAGGATTAT
GTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTTTAACAGATTAA
AGGCTTTGAATGGTGAGAGGAGTCGGTTGGCCCAGAGCTTTGAGTACAAT
TACGGTGATTTTATTCCCATTTTGAGACCTTTCTTGAGAGGCTACTTGAA
GATTTGTAAGGAAGTTAAAGAAAGGAGACTCCAGCTCTTCAAGGACTACT
TTGTT
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