FC929480

Overview
NameFC929480
Unique NameFC929480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HERC5_HUMAN (Probable E3 ubiquitin-protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.764e-20
Identity = 76/277 (27.44%), Postives = 119/277 (42.96%), Query Frame = 2
Query:   14 QYGLFKETSDHLLYPNPGSGMIHEQHLQF----FHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSA-TCMNLLKL 829
            +YG+F       +YP   S M      +F    + F G+L   ++F   + ++PF      KL  +   L DL  L P+L ++L  L   E D    E  F I  N + ++ +  L+P G +I V   N   ++    N+  N  ++     F RGF ++  +D I +F+  E                 + N  Y  GY+S H  I MFW+     +LE +KKFL F+TG  R  +     ++  FC         E   +R P  A TC ++L L
Sbjct:  741 EYGMF-------MYPEGASCMWFPVKPKFEKKRYFFFGVLCGLSLFNCNVANLPFPLALFKKLLDQMPSLEDLKELSPDLGKNLQTLLDDEGD--NFEEVFYIHFNVHWDRNDTNLIPNGSSITVNQTNKRDYVSKYINYIFNDSVKAVYEEFRRGFYKMCDEDIIKLFHPEELKDVIVGNTDYDWKTFEK-NARYEPGYNSSHPTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQMKDLNNMKITFC-------CPESWNERDPIRALTCFSVLFL 1000          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.260e-18
Identity = 78/280 (27.86%), Postives = 122/280 (43.57%), Query Frame = 2
Query:   50 LYPNPGSGMIHEQH-LQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLK------------HYEADISELELYF-------VILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            L+P P SG       LQ F  LG ++AKA+ +G ++D+P +  F   +  +     D+  +DPEL + L+ L+            H ++  ++ +L F       + L       T+ +L P   N  V  +N+  +I  + N  +   I++Q   F  GF Q+   + + +FNE E                   +  +  GY S    +E   ++L  F  E Q+ FL+FVTG  R P  G   L P   I R  GS S +    LP+  TC N LKL
Sbjct: 1198 LFPRPWSGTSTTSDVLQKFVLLGTVVAKALQDGRVLDLPLSKAFYKLILGQELSSFDIHFVDPELCKTLVELQALVRRKKLFAEAHGDSGAAKCDLSFHGTKIEDLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGSDSSDT--DLPSVMTCANYLKL 1475          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 71/277 (25.63%), Postives = 123/277 (44.40%), Query Frame = 2
Query:   47 LLYPNPGSGMIH-EQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYN-YLNDLPS-----------LDPELYRHLIFLKHYEAD---ISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            LL+P P +   + E+ ++ F +LG  +A+++ +  ++D  F+  F   L R     +  +PS           +DP L + L ++   + D   +  L L F +  N+     + EL+PGG N  + + NV  +IH V +  L   I +Q   F+ GF ++   + + +    E                   N N   GY  +  +I  F  ++ +F    ++ FL+F+TG  + P+ GFK L P F +          A + LP+  TC N LKL
Sbjct: 1185 LLFPEPLNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFFELLHRMSTPNVTTVPSDVETCLLMIELVDPLLAKSLKYIVANKDDNMTLESLSLTFTVPGND-----DIELIPGGCNKSLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYLKL 1456          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.710e-17
Identity = 69/269 (25.65%), Postives = 111/269 (41.26%), Query Frame = 2
Query:   32 ETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEE------ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXX-RQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMN 817
            E+ +H L    GS        + ++  G++L  A++   ++D+ F   F  K+  +   +ND   L PE   +++ +  Y+ +  E +++ +     + ++ +E      +L P G    VT EN   +  L  +  LN  I      F  GF  +I+ +   +F   E                  R  T Y GG+     V++ FWE+L       Q+K L FVTG  R P  G   +   F I R    A     DRLP S TC N
Sbjct:  555 ESIEHELLQGEGSSS------ELYYLFGVVLGLAIYNSTILDLKFPRAFYKKICGEVLSVNDFLELYPETGTNMLKMLEYDGEDFE-DIFALTFETCFPDRFDESKIHYRQLCPDGSTQAVTRENKHEYFRLWMDFYLNRSIAPGFESFRNGFFHVIEGNSFRLFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTIP--FRISRIRSGA-----DRLPLSHTCFN 809          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 79/269 (29.37%), Postives = 116/269 (43.12%), Query Frame = 2
Query:  101 FHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYL--NDLPSLDPELYRHLIFL-------KHYEADISELE---LYFVILNNEYGEQTEE-------------ELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHE-XXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            F FLG L+AKA+ +  LVD+P    F   + R+   L  +DL  +DP + R +  L       K  E D S+ +    Y +      G   E+             EL  GGK+I VT  N+  ++ LV    LN  + +Q   F  GF+ +     +  F   E                   +      GY  +   ++  +E+L SF  E Q+ FL+FVTG  R P+ GF+ L P   I R    ++E   D LP+  TC+N LKL
Sbjct: 1697 FRFLGKLMAKAIMDFRLVDLPLGLPFYKWMLRQETSLTSHDLFDIDPVVARSVYHLEDIVRQKKRLEQDKSQTKESLQYALETLTMNGCSVEDLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKL 1965          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HERC6_HUMAN (Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 74/277 (26.71%), Postives = 122/277 (44.04%), Query Frame = 2
Query:   14 QYGLFKETSDHLLYPNPGSGMIHE-----QHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            +YG+F       +YP  GS M        +  ++F F G+L   ++F   + ++PF      KL  +   L DL  L P L + L  +    AD  ++     I  + + +Q + +L+P G +I V   N   ++    ++  N  ++     F RGF ++ +K+ +  F   E                  QN+ Y  GY   H  I++FW+     +L+ +KKFL F+TG  R    G + +E +F   R   + SE      PTS TC N+L L
Sbjct:  732 EYGMF-------MYPEMGSCMWFPAKPKPEKKRYFLF-GMLCGLSLFNLNVANLPFPLALYKKLLDQKPSLEDLKELSPRLGKSLQEVLDDAAD--DIGDALCIRFSIHWDQNDVDLIPNGISIPVDQTNKRDYVSKYIDYIFNVSVKAVYEEFQRGFYRVCEKEILRHFYPEELMTAIIGNTDYDWKQF-EQNSKYEQGYQKSHPTIQLFWKAFHKLTLDEKKKFLFFLTGRDRLHARGIQKMEIVF---RCPETFSER---DHPTSITCHNILSL 991          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.802e-16
Identity = 77/259 (29.73%), Postives = 109/259 (42.08%), Query Frame = 2
Query:  101 FHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNY--------------LNDLPSLDPELYRHLIFLKHYEADISELELY--FVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            F  +GIL+  A++  I +DI F      KL                    ++DL  + PEL   L  L  YE ++ E + Y  F +   E+G      L PGG  I VTN+N   ++ L ++  LN  I +Q + F  GF  +   + + +    E                 R +T Y  GY      I  FW+V+  F LE QKK L F TG  R P+ G   L   F I     S +E + + LP + TC N L L
Sbjct:  500 FRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPVVPSDQSTPVGICSVTIDDLCQVMPELAHGLKELLSYEGNVEE-DFYSTFQVFQEEFGVIKSYNLKPGGDKIPVTNQNRREYVQLYTDFLLNKSIYKQFAAFYCGFHSVCASNALMLLRPEEVEILVCGSPELDMHALQR-STQY-DGYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADLN--FKI-----SKNETSTNWLPVAHTCFNQLCL 748          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.979e-15
Identity = 76/259 (29.34%), Postives = 111/259 (42.86%), Query Frame = 2
Query:  101 FHFLGILLAKAMFEGILVDIPFATFFLSKL------KRKYNY--------LNDLPSLDPELYRHLIFLKHYEADISELELY--FVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            F  +GIL+  A++  I +DI F      KL          N         ++DL  + PEL   L  L  +E ++ E + Y  F +   E+G      L PGG  I VTN+N   ++ L ++  LN  I +Q + F  GF  +   + + +    E                 R +T Y  GY      I+ FW+V+  F L+ QKK L F TG  R P+ G   L   F I     S +E + + LP + TC N L L
Sbjct:  502 FRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQNIPVGICSVTVDDLCQIMPELAHGLSELLSHEGNVEE-DFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQR-STQY-DGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLN--FKI-----SKNETSTNCLPVAHTCFNQLCL 750          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.979e-15
Identity = 76/259 (29.34%), Postives = 111/259 (42.86%), Query Frame = 2
Query:  101 FHFLGILLAKAMFEGILVDIPFATFFLSKL------KRKYNY--------LNDLPSLDPELYRHLIFLKHYEADISELELY--FVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWINMFNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKL 829
            F  +GIL+  A++  I +DI F      KL          N         ++DL  + PEL   L  L  +E ++ E + Y  F +   E+G      L PGG  I VTN+N   ++ L ++  LN  I +Q + F  GF  +   + + +    E                 R +T Y  GY      I+ FW+V+  F L+ QKK L F TG  R P+ G   L   F I     S +E + + LP + TC N L L
Sbjct:  502 FRLVGILMGLAVYNSITLDIRFPPCCYKKLLSPPIIPSDQNIPVGICNVTVDDLCQIMPELAHGLSELLSHEGNVEE-DFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFLLNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQR-STQY-DGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLN--FKI-----SKNETSTNCLPVAHTCFNQLCL 750          
BLAST of FC929480 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.585e-15
Identity = 70/269 (26.02%), Postives = 108/269 (40.15%), Query Frame = 2
Query:   56 PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKRKYNYLNDLPSLDPELYRHLIFLKHYEAD----ISELELYFVILNNEY--------GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK-DWINMFN--EHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMN 817
            PN          L+ ++  G+++  A+F   ++D+ F      KL  +     D   L PE  R+LI + +Y  D    +  L       NN +         E    EL   G+N+ +T  N   F+       L   I  Q + F+ GF+++  + + I +FN  E E                 R  T YVGG+  +   +  FWE+++S+    QKK L+FVT   R P  G   +   F I       S    D LP + TC N
Sbjct:  600 PNFDKSKGKNSQLELYYLFGVVMGLAIFNSTILDLQFPKALYKKLCSEPLSFEDYSELFPETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTVELCENGRNVPITQSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTIP--FKISLLGSHDS----DDLPLAHTCFN 862          
The following BLAST results are available for this feature:
BLAST of FC929480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
HERC5_HUMAN7.764e-2027.44Probable E3 ubiquitin-protein ligase HERC5 OS=Homo... [more]
UPL4_ARATH4.260e-1827.86E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
UFD4_YEAST4.710e-1725.63Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HUL4_ASHGO4.710e-1725.65Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
TRIPC_HUMAN1.049e-1629.37Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
HERC6_HUMAN3.053e-1626.71Probable E3 ubiquitin-protein ligase HERC6 OS=Homo... [more]
HECD2_MOUSE6.802e-1629.73Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
HECD2_PONAB1.979e-1529.34Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN1.979e-1529.34Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
HUL4_YEAST2.585e-1526.02Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CF04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929480 ID=FC929480; Name=FC929480; organism=Citrus clementina; type=EST; length=829bp
AGCATTTGATGTTCAGTATGGGTTATTCAAGGAAACATCTGATCACTTGC
TCTACCCTAATCCTGGATCTGGAATGATACATGAGCAGCATCTCCAGTTT
TTTCATTTTCTTGGAATTCTACTTGCAAAGGCCATGTTTGAAGGAATTCT
TGTTGATATCCCATTTGCAACATTCTTCTTGAGCAAGTTAAAACGGAAGT
ACAATTATTTGAATGACTTGCCCTCGTTAGATCCTGAATTATATCGTCAC
CTTATTTTCTTGAAGCATTATGAAGCTGACATTTCGGAGTTAGAACTCTA
CTTTGTTATTCTGAACAATGAATATGGAGAGCAAACAGAAGAGGAGCTGC
TTCCAGGAGGGAAGAACATACGTGTTACTAATGAGAATGTTATCACATTT
ATTCATCTTGTGTCCAATCACCGGCTGAATTTTCAGATACGTCAACAAAG
CTCTCATTTCCTGAGAGGCTTTCAGCAGCTTATACAGAAAGATTGGATCA
ATATGTTTAATGAGCATGAACTACAGCTGCTAATATCAGGTTCACTCGAT
AGCTTGGATTTTGATGACCTGAGACAGAACACTAACTATGTGGGAGGTTA
TCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTCCTCAAAAGCT
TTTCACTGGAAAACCAAAAGAAATTTTTGAAGTTTGTGACTGGGTGCTCT
CGAGGACCACTACTGGGATTCAAATATCTCGAGCCTTTATTCTGCATACA
AAGAGCTGCTGGTAGTGCTTCTGAAGAAGCTCTTGATCGGTTACCGACAT
CGGCTACTTGCATGAATCTTCTTAAGCTT
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