FC929489

Overview
NameFC929489
Unique NameFC929489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 77/240 (32.08%), Postives = 116/240 (48.33%), Query Frame = 1
Query:   73 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 792
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L    S G     EI  T   V  +F+  D +R+ +   V     L +GF++ + HL  +  TG G+NPARS   A++      + + W++WVGP IG  + +  + F+L
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAPGP-------LHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQLGSV----ALAVGFSLALGHLFGMYYTGAGMNPARSFAPAILTGN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 78/240 (32.50%), Postives = 117/240 (48.75%), Query Frame = 1
Query:   73 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 792
            EL   SF+RA+ AEF A            +G   +  P         + +L +A AFG  +  LV     ISG H+NPAVTF   +  ++SL+RA  YM AQ LGA++G  ++ +       R     N L  G S       EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARS   A++    + + + W++WVGP IG  + +  + F+L
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGP-------LHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPP-AVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEAE (Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.214e-25
Identity = 68/200 (34.00%), Postives = 108/200 (54.00%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG---LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 789
            G+G LG+A AFG  +  + Y    ISG H+NPAV+ GL++  +    + + Y+VAQ LG ++  G   L+ + +  +    G  +N   +    GYS    L +E++ T + +  +  AT  KR+ +       AP+ IG  + ++HL +IP+T T +NPARS  A  +Y  D A    WLFWV P +GA + A  ++ I
Sbjct:   32 GIGYLGVALAFGLSVLTMAYAIGPISGAHLNPAVSVGLWVGGRFPASQLLPYVVAQVLGGLAAGGVLYLIASGKAGFDLAAGFASNGYGEHSPGGYSLQAALVSEVVLTGMFLLIILGATS-KRAPQG-----FAPIAIGLTLTLIHLISIPVTNTSVNPARST-AVALYVGDWAVSQLWLFWVAPILGAVLGALAYRLI 224          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: AQPZ_VIBVU (Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.070e-25
Identity = 66/201 (32.84%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYY----TRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 789
            G+G+LG++ AFG  +  + +    ISG H+NPAVT GL+   +      V Y++AQ +G +   G++            T  G  +N   +    GYS    L  E++ T + +  +  ATD +           AP+ IG  + ++HL +IP+T T +NPARS G A +Y  D A    WLFWV P +GA + A  ++ I
Sbjct:   32 GIGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVTIGLWAGGRFEAKEIVPYILAQVIGGVIAGGVLYTIASGQMGFDATSSGFASNGYGEHSPGGYSLTSALVTEVVMTMMFLLVILGATDQRAPQG------FAPIAIGLCLTLIHLISIPVTNTSVNPARSTGVA-LYVGDWATAQLWLFWVAPILGALLGAVAYKLI 225          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.704e-25
Identity = 68/197 (34.52%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  217 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVG----LAAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 792
            G++ ++ A    + V V     ISGGH+NPA+TFG  L  ++SL+RA+ Y +AQ LGA+    L++           GG        ++GVG    +  E   TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W   W++W+GPF+GA +A   +++++
Sbjct:   62 GLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTT--------GGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: AQPZ_SHEON (Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.704e-25
Identity = 65/199 (32.66%), Postives = 105/199 (52.76%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG---LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQF 786
            G+G+LG++ AFG  +  + +    ISG H+NPAV+FGL+   +      + Y++AQ  G I+G G   L+ + Q+ +    G  +N   +    GYS    +  EI+ T   +  +  +TD +           AP+ IG  + ++HL +IPI+ T +NPARS G A ++  D A    WLFW  P IGA +A   +++
Sbjct:   33 GIGLLGVSLAFGLTVLTMAFAIGHISGCHLNPAVSFGLWAGGRFPTSELLPYIIAQVAGGIAGAGVLYLIASGQEGFSLAAGFASNGFGEHSPGGYSMISVMICEIVMTLFFLLVILGSTDERAPKG------FAPIAIGLCLTLIHLISIPISNTSVNPARSTGPA-LFVGDWAVSQLWLFWAAPIIGAILAGVIYRY 224          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 76/232 (32.76%), Postives = 113/232 (48.71%), Query Frame = 1
Query:   97 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 789
            +A +AEFI+            + +   T            G++  A A    +FV V   A ISGGH+NPAVTFG F+   ++L R ++Y +AQ LG+     L++       T   G       G S    L  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L      G  +NPA S G A++     +W+ QW++WVGP IG  +A   ++ +
Sbjct:   21 KAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPA----GLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFG-----LTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 71/190 (37.37%), Postives = 99/190 (52.11%), Query Frame = 1
Query:  199 DGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            DG     ++ IA  FG  +   ++C AG+SGG +NPAV+  L LAR VS  R V+  V+Q +  ++  G   A            AN L  G S   GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAAV       +   W++W+GP +G+ +A
Sbjct:   84 DGSHPGQLIMIAIGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVL----FANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILA 262          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: AQPZ_PHOLL (Aquaporin Z OS=Photorhabdus luminescens subsp. laumondii GN=aqpZ PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.531e-25
Identity = 64/201 (31.84%), Postives = 101/201 (50.25%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYY----TRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 789
            G+G +G++ AFG  +  ++Y    ISGGH NPAVT GL+   +   V  + Y+++Q +G I    ++            T  G  +N   +    G+S    + AEI+ T + +  +  ATD +        P  APL IG A+ +++L +IPIT T +NPARS   A+  N   A +  W FWV P IG  +    ++ +
Sbjct:   33 GIGFVGVSLAFGLTVLTMIYAVGHISGGHFNPAVTIGLWAGGRFRAVEVIPYIISQVIGGILAAAVLYVIASGQVGFDATTSGFASNGFGEHSPGGFSLQSAIVAEIVLTAIFLIVIIGATDRRAP------PGFAPLAIGLALVLINLISIPITNTSVNPARSTAVAIFQN-TWALEQLWFFWVMPIIGGIVGGGIYRLL 226          
BLAST of FC929489 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.612e-25
Identity = 71/185 (38.38%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  220 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ--KSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA 768
            ++ IA  FG  +   ++C AG+SGG +NPAV+  L LAR +S  R V+    Q +  ++  G   A    K  +T      N L  G S   GL  E+ GT VL  TV      KR         +A LPIG ++FM H+A    TGTG+NPARSLGAAV       +   W++W+GP +GA +A
Sbjct:   90 LIMIALGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAISPARCVVMWFPQIIAGMAAGGAASAMTPGKVLFT------NALGLGCSRSRGLFLEMFGTAVLCLTVLMTAVEKRETN-----FMAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
The following BLAST results are available for this feature:
BLAST of FC929489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
MIP_HUMAN1.214e-2532.08Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CAVPO1.214e-2532.50Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQPZ_PSEAE1.214e-2534.00Aquaporin Z OS=Pseudomonas aeruginosa GN=aqpZ PE=3... [more]
AQPZ_VIBVU2.070e-2532.84Aquaporin Z OS=Vibrio vulnificus GN=aqpZ PE=3 SV=1[more]
TIP31_ORYSJ2.704e-2534.52Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
AQPZ_SHEON2.704e-2532.66Aquaporin Z OS=Shewanella oneidensis GN=aqpZ PE=3 ... [more]
TIP11_ORYSJ3.531e-2532.76Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
AQY1_YEAST3.531e-2537.37Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQPZ_PHOLL3.531e-2531.84Aquaporin Z OS=Photorhabdus luminescens subsp. lau... [more]
AQY2_YEAST4.612e-2538.38Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CG01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929489 ID=FC929489; Name=FC929489; organism=Citrus clementina; type=EST; length=821bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTTACA
ACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTC
ATTGGTGCAGCAATTGCAGCTTTCTACCACCAATTCATCTTGAGAGCTGG
AGCTGTCAAGGCTCTTGGTTC
back to top