FC929503

Overview
NameFC929503
Unique NameFC929503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:45..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROYA (60S ribosomal protein L32 OS=Drosophila yakuba GN=RpL32 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROSI (60S ribosomal protein L32 OS=Drosophila simulans GN=RpL32 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROME (60S ribosomal protein L32 OS=Drosophila melanogaster GN=RpL32 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL V +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROAC (60S ribosomal protein L32 OS=Drosophila acanthoptera GN=RpL32 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+ KRKEIVERA QL V +TN  ARLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNREYCGEIAHGVSSNKRKEIVERAKQLSVRLTNPNARLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROPS (60S ribosomal protein L32 OS=Drosophila pseudoobscura pseudoobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROPE (60S ribosomal protein L32 OS=Drosophila persimilis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROMI (60S ribosomal protein L32 OS=Drosophila miranda GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROAZ (60S ribosomal protein L32 OS=Drosophila azteca GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROAI (60S ribosomal protein L32 OS=Drosophila affinis GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRVYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
[Close]
BLAST of FC929503 vs. ExPASy Swiss-Prot
Match: RL32_DROSU (60S ribosomal protein L32 OS=Drosophila subobscura GN=RpL32 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = -3 
Query:  248 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 589
            R QSDR   +   WR+PKGID+RVRR+FKG  LMPNIGYGS+K+TRH LP GFKKF+VHNV ELE+L+M NR YC EIAH VS+KKRKEIVERA QL + +TN   RLRSQE E
Sbjct:   21 RHQSDRYAKLSHKWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVLLMQNRIYCGEIAHAVSSKKRKEIVERAKQLSIRLTNPNGRLRSQENE 134
The following BLAST results are available for this feature:
BLAST of FC929503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_DROYA2.383e-4070.1860S ribosomal protein L32 OS=Drosophila yakuba GN=... [more]
RL32_DROSI2.383e-4070.1860S ribosomal protein L32 OS=Drosophila simulans G... [more]
RL32_DROME2.383e-4070.1860S ribosomal protein L32 OS=Drosophila melanogast... [more]
RL32_DROAC4.065e-4070.1860S ribosomal protein L32 OS=Drosophila acanthopte... [more]
RL32_DROPS5.308e-4069.3060S ribosomal protein L32 OS=Drosophila pseudoobsc... [more]
RL32_DROPE5.308e-4069.3060S ribosomal protein L32 OS=Drosophila persimilis... [more]
RL32_DROMI5.308e-4069.3060S ribosomal protein L32 OS=Drosophila miranda GN... [more]
RL32_DROAZ5.308e-4069.3060S ribosomal protein L32 OS=Drosophila azteca GN=... [more]
RL32_DROAI5.308e-4069.3060S ribosomal protein L32 OS=Drosophila affinis GN... [more]
RL32_DROSU6.933e-4069.3060S ribosomal protein L32 OS=Drosophila subobscura... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929503 ID=FC929503; Name=FC929503; organism=Citrus clementina; type=EST; length=723bp
TTTTTTTTTTTTTTTTTAGTGCAAAATATGCAGAGTTAATAAAAGGCTTG
GCCATAAACCTTAACTCCTAAGTTGACATAACATTAATCATGCTCCACAA
AAGACAACAAATTCAAAATATCATTCAGGTGACAAATAGAAAATACATCA
TAATTCAACCCTGGAAATGTTCATCCATTCCAAAGACAACCTAGGAAACA
TTTGGCCAAAAGCAAACACTAACACAAAATATAGAAACCAATTTTTACTC
CTCCTCCTGGCTGCGCAACCTGGCCAATTTGTTGGTGACCACAACATCCA
ATTGTGCAGCACGCTCGACAATCTCCTTTCTCTTCTTGGTTGATACATTG
TGGGCTATCTCAGCACAATAAGTCCTGTTGTGCATCATCAAGAGTTCCAG
TTCATTGACATTGTGCACAACAAACTTCTTGAATCCATTGGGCAGATAGT
GGCGTGTTTTCTTGTCCGAGCCGTAGCCAATATTGGGCATCAAAACACAT
CCTTTGAACTTTCTCCTGACACGTGAATCAATACCCTTCGGCCTTCGCCA
ATTTTCCTTCACTGATATCTTCCTGTCACTCTGGGGCCTCTTGAACTTCT
TGAGACGCTTCTTCACTATCTTCTTGGTCAGCAAAGGAACAGCCATTTTT
CTGAAACGATGAGCCGCGGCTTCTGCCAACAAAAGACAGTTGAGACAGCA
AAACATTCGGAAAAAAAAAAAAA
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