FC929507

Overview
NameFC929507
Unique NameFC929507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 54/202 (26.73%), Postives = 101/202 (50.00%), Query Frame = -1
Query:  193 SAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELA 792
            SA++T+  Q++G+  YEM+G++LQR   +L L    + +++     IL+FL + P     AA ++  ++    AYAL   +++FLQ Q I  P  YI    + +++ L+++ V+                 + W       +YI+K +  +  W GF+ +A        +L+    +M+C E W F+++   +G+L   ELA
Sbjct:  156 SALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNG-RQAWGGFSREALKNWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELA 356          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 57/206 (27.67%), Postives = 97/206 (47.09%), Query Frame = -1
Query:  181 SAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 792
            S+++TL  QA+GANK   + IYLQR  ++L +  I + ++++    ILIFL + P +A     ++   I     YA+   ++++LQAQ I  P  Y+      +++LL+++ V+                 ++W   I   +YI  S      W GF+ QA   L      S    +M+  E   +++  L AG L    LA  S+
Sbjct:  150 SSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSS-TPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSI 354          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 55/210 (26.19%), Postives = 98/210 (46.67%), Query Frame = -1
Query:  181 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIA----SSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 798
            + SA +TL  Q++G+   + +G+ LQR A++L L  +    L++ ++ IL+   + P+++        +F+ GL P IF Y L   + K+LQ Q I  P          V+ + ++  V                S +   +   +YIV       TW G++ Q       FF L+  S +M+C+E W ++I   L GLL   +L+  ++
Sbjct:   88 LSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGL-PVIFLYNL---LAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAV 293          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = -1
Query:  211 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIA----SSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLL 798
            + SA +TL  Q++G+   + +G+ LQR +++L L  +    L++ ++ IL+   + P ++      A +F+ GL P IF Y+L   + K+LQ Q IV P          V+ + ++  V                S ++     F++IV       TW G++ Q       F  L+  S +M+C+E W ++I   L GLL
Sbjct:  117 LSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGL-PAIFLYSL---LAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLL 312          
BLAST of FC929507 vs. ExPASy Swiss-Prot
Match: YD338_YEAST (Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae GN=YDR338C PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 50/207 (24.15%), Postives = 98/207 (47.34%), Query Frame = -1
Query:  184 MGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDS 798
            + ++++TLC QAYG+ ++  +G++LQR      +  I   V++ +S P+L ++    ++ +  + F+  LI    AY     +++FLQAQ I     Y+ T    +++L+S+  V+                 ++W++      Y +  D  K  W GF+ +AF+       L+ +  +ML  E   +++L L +       LA  S
Sbjct:  285 IATSLDTLCPQAYGSGRFYSVGVHLQRCIAFSLVIYIPFAVMWWYSEPLLSYIIPEKELINLTSRFLRVLILGAPAYIFFENLKRFLQAQGIFDAGIYVLTICAPLNVLVSYTLVWNKYIGVGFIGAAIAVVLNFWLMFFLLLFYALYIDGRK-CWGGFSRKAFTHWNDLGHLAFSGIIMLEAEELSYELLTLFSAYYGVSYLAAQS 490          
The following BLAST results are available for this feature:
BLAST of FC929507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YJ2D_SCHPO8.448e-1726.73Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
YL47_SCHPO2.544e-1327.67Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A2_PONAB4.339e-1326.19Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A2_RABIT7.401e-1327.00Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
YD338_YEAST1.396e-1124.15Uncharacterized transporter YDR338C OS=Saccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CH10RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929507 ID=FC929507; Name=FC929507; organism=Citrus clementina; type=EST; length=858bp
GGAAAATTACCCATTTGAACAATCAAATGTAGCAAATGATGGCTTTGGCA
ACCAAATGAAATCATGAGTGATTTGTGAAACTAATTTACTGAAAGTTAAG
GGGGGAGAGCTTAGATGCAATTATCAGAAAAGGGCGTGACCAAAAAGGGA
AGGAAAATAGTTTTCTGCTTACCAAATGGAAAGAGAGTCCAAAGCCAACT
CCGGATTTGGTAACAAACCAGCCAATAGAACAAGAATCTGAAAGTACCAC
GTCTCCAAGCACAGCATCACAGCGGAGGCAGCCGATAGTTTGAAGAAGGA
AGGGAGACCAGAGAAGGCCTGAACAGTAAACCCACGCCACGTGTGCTTAC
ACCTATCACTTTTAACAATATAAACAAACTGAGCAATCACAACAATCCAC
CAGGATAAGCTCAAGATCAGTGAGGCGCCAATCAAGCCAAGCCCGATTTC
GTAGACTGCAACCCAACTTAGCAGCAGATGCACCACTAACGTGGCCGTTG
AAATGTATGCACTTGGAGCCACTATGCTTTGTGCTTGCAAAAATTTTTGG
ATTGGGAAGTTCAAGGCGTATGCAAAGATTTGGGGTATCAGGCCGTAGAC
AAAAACTGCCGCTGATGAGGCAATATCTGGCGACTCCCCTAGAAAAATCA
AAATTGGTCTCGAAAAGACGTATAGAACTGTCATTAAAATCCCCGTGAGC
GTCAGCAGAACCGCTGATCTTTGCAAATATATCCCTAGCATTTCATATTT
GTTTGCACCGTATGCTTGCCCACATAATGTCTCCACGGCACTTCCCATTA
CCCACTGTTAACAAAAGAATTTAATTATAAGAATATTAAAGTACCCTGTG
TGCGTGTG
back to top