FC929528

Overview
NameFC929528
Unique NameFC929528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length954
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.502e-73
Identity = 137/265 (51.70%), Postives = 169/265 (63.77%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCYHNSLLG 884
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +    G
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.562e-73
Identity = 129/241 (53.53%), Postives = 164/241 (68.05%), Query Frame = 3
Query:  150 TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN-LNYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDC 863
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  + +E+AAF AQT HETTGGW  AP G YAWGYCF+SE +    YC+  ++PC    KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q  KPS H+VIT  W PSA D  AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDC 313          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.398e-71
Identity = 132/271 (48.71%), Postives = 168/271 (61.99%), Query Frame = 3
Query:  105 CGSGVVCGERDTGH----------GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPP--SPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCYH 869
            CGSG  C  + +G           G  G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   R RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +    S YC  +  +PC    KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q PKPSCH V+T +W P+ ND  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+
Sbjct:   51 CGSG--CQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYN 317          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 3.132e-71
Identity = 131/246 (53.25%), Postives = 162/246 (65.85%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCG 827
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 267.7 bits (683), Expect = 6.978e-71
Identity = 137/272 (50.37%), Postives = 168/272 (61.76%), Query Frame = 3
Query:  105 CGSGVVCGE----RDTGHG----------TDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCY 866
            CGS   CG+    + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G NLDCY
Sbjct:   43 CGSTPYCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCY 312          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.190e-70
Identity = 130/242 (53.72%), Postives = 159/242 (65.70%), Query Frame = 3
Query:  156 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCYH 869
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G NLDCY+
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYN 316          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.555e-70
Identity = 129/244 (52.87%), Postives = 156/244 (63.93%), Query Frame = 3
Query:  147 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCY 866
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   + RE+AAF AQT HETTGGW  AP G +AWGYCF  E    S YC  +  +PC    +YYGRGPIQL+ NYNY                    ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G NLDCY
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCY 260          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 2.652e-70
Identity = 133/261 (50.96%), Postives = 164/261 (62.84%), Query Frame = 3
Query:  105 CGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSP-YCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCYH 869
            C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+     RE+AAF AQT HETTGGW  AP G Y+WGYCF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q PKPSCH VIT +W PSA+D  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  G NLDCY+
Sbjct:   57 CSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYN 313          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.907e-70
Identity = 128/245 (52.24%), Postives = 157/245 (64.08%), Query Frame = 3
Query:  147 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCYH 869
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   R R++AAF AQT HETTGGW  AP G +AWGYCF  E    + YC  +  +PC    +YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYN 261          
BLAST of FC929528 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.529e-68
Identity = 123/244 (50.41%), Postives = 155/244 (63.52%), Query Frame = 3
Query:  165 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVXAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIRPGYNLDCYHNSLLG 884
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+  E   P  YC  +  +PC    KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ PKPS H+VIT  W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG NLDC +    G
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLV--ANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
The following BLAST results are available for this feature:
BLAST of FC929528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI3_SOLTU1.502e-7351.70Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIX_PEA2.562e-7353.53Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_ORYSJ2.398e-7148.71Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU3.132e-7153.25Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_HORVU6.978e-7150.3726 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE1.190e-7053.72Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU1.555e-7052.8726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI3_ORYSJ2.652e-7050.96Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE5.907e-7052.24Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC5.529e-6850.41Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB11RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929528 ID=FC929528; Name=FC929528; organism=Citrus clementina; type=EST; length=954bp
GGATAATTGATATCATAACTGTTGCTTTCAAAATGAGGCTTATTGCGTCC
TTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACG
GAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACT
CTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACT
GTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATT
CAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCT
AGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTAC
TATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAG
CCATCATGCCACGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGA
CGTANACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCA
ACGGTGGAATTGAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGT
ATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTTGGGATTCGCCCTGGTTA
CAATCTTGATTGCTACCACAACAGCCTTTTGGGCTTATTCTGATGGCACG
ATCTATGTGATCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAA
GCTA
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