FC929529 | Citrus Genome Database

Overview


Name	FC929529
Unique Name	FC929529
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	852

Libraries


Library Name	Type
PhII-IIIV1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC929529_ssr137	microsatellite	FC929529_ssr137:137..148.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267	contig	Ccv1_Contig9267:2..852.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 57.7658 bits (138), Expect = 1.703e-15
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 46.2098 bits (108), Expect = 1.703e-15
Identity = 23/46 (50.00%), Postives = 27/46 (58.70%), Query Frame = -2

Query:  654 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 791
            G N+LADG N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  125 GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 57.7658 bits (138), Expect = 1.703e-15
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 46.2098 bits (108), Expect = 1.703e-15
Identity = 23/46 (50.00%), Postives = 27/46 (58.70%), Query Frame = -2

Query:  654 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 791
            G N+LADG N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  125 GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 2.876e-15
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG++VI +  K   D WIFWVGPFIG  +A   + +IL
Sbjct:  189 TGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALAVLIYDFIL 233

HSP 2 Score: 44.2838 bits (103), Expect = 2.876e-15
Identity = 22/37 (59.46%), Postives = 24/37 (64.86%), Query Frame = -2

Query:  681 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 791
            G NELA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  127 GRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 6.309e-15
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  190 TGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234

HSP 2 Score: 41.9726 bits (97), Expect = 6.309e-15
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = -2

Query:  681 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 791
            G N LA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  127 GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 60.077 bits (144), Expect = 6.311e-15
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  189 TGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233

HSP 2 Score: 41.9726 bits (97), Expect = 6.311e-15
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = -2

Query:  681 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 791
            G N LA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  127 GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 57.3806 bits (137), Expect = 1.799e-14
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AV+    + + + WIFWVGPFIG+ +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALAVLIYDFIL 231

HSP 2 Score: 43.1282 bits (100), Expect = 1.799e-14
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = -2

Query:  654 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 791
            G N+LA G N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  125 GRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 56.9954 bits (136), Expect = 1.799e-14
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AV+    + + + WIFWVGPFIG  +A   + +IL
Sbjct:  187 TGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 43.5134 bits (101), Expect = 1.799e-14
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = -2

Query:  654 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 791
            G N+LA G N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  125 GRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 2.338e-14
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG GINPARSFG+AVI +    + D W+FWVGPFIG  +A   + +IL
Sbjct:  189 TGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233

HSP 2 Score: 40.817 bits (94), Expect = 2.338e-14
Identity = 21/46 (45.65%), Postives = 25/46 (54.35%), Query Frame = -2

Query:  654 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 791
            G N LA G + G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  127 GLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 172

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 4.370e-12
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = -1

Query:  448 TGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 591
            TG G+NPARSFG+AV+    K +   WIFWVGP IG   AA  + +IL
Sbjct:  191 TGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235

HSP 2 Score: 38.5058 bits (88), Expect = 4.370e-12
Identity = 24/69 (34.78%), Postives = 33/69 (47.83%), Query Frame = -2

Query:  597 GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVL----APLPHWVCCVHGSLGHHP 791
            G N L+ G + G GLG EI+ TF LV  V + TD +R      VP+       L H +   +   G +P
Sbjct:  129 GLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNP 197

[Close]

BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.721e-11
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = -1

Query:  448 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 597
            P +G  +NPAR+FG A++  +   W D WI+WVGPFIG+ +AA  ++Y++
Sbjct:  200 PFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246

HSP 2 Score: 32.7278 bits (73), Expect = 2.721e-11
Identity = 22/47 (46.81%), Postives = 27/47 (57.45%), Query Frame = -2

Query:  642 LADGYNKGTGLGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPL 779
            LA G     GL  EII TF LVY V+S   DPKR +    + ++APL
Sbjct:  143 LASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPL 185

The following BLAST results are available for this feature:

BLAST of FC929529 vs. ExPASy Swiss-Prot

BLAST of FC929529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51


Match Name	E-value	Identity	Description
AQP1_PONAB	1.703e-15	56.25	Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3	[more]
AQP1_HUMAN	1.703e-15	56.25	Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3	[more]
AQP1_CANFA	2.876e-15	58.33	Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3	[more]
AQP1_SHEEP	6.309e-15	58.33	Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3	[more]
AQP1_BOVIN	6.311e-15	58.33	Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3	[more]
AQP1_RAT	1.799e-14	54.17	Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4	[more]
AQP1_MOUSE	1.799e-14	54.17	Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3	[more]
AQP1_PIG	2.338e-14	56.25	Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3	[more]
AQPA_RANES	4.370e-12	54.17	Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S...	[more]
TIP31_ARATH	2.721e-11	46.00	Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAH1AB12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AB12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC929529 ID=FC929529; Name=FC929529; organism=Citrus clementina; type=EST; length=852bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGC
CAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAG
AGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGT
CCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATA
CCTGTTGTAGTATGATTTTTGGAAAGCCTTCCAAACCCACACCACAGATT
GC