FC929529

Overview
NameFC929529
Unique NameFC929529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929529_ssr137 microsatellite FC929529_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267 contig Ccv1_Contig9267:2..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929529 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.532e-11
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = -1 
Query:  448 PITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 597
            P  G  +NPAR+FG A++  +   W + WI+WVGPFIG  +AA  ++Y++
Sbjct:  200 PFDGASMNPARAFGPALVGWR---WSNHWIYWVGPFIGGALAALIYEYMI 246

HSP 2 Score: 34.6538 bits (78), Expect = 3.532e-11
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = -2 
Query:  642 LADGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPL 779
            +A G ++  GL  EII TF LVY V+S A DPKR +    + ++APL
Sbjct:  143 VASGVSELHGLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPL 185
The following BLAST results are available for this feature:
BLAST of FC929529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TIP32_ARATH3.532e-1144.00Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1AB12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929529 ID=FC929529; Name=FC929529; organism=Citrus clementina; type=EST; length=852bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGC
CAAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAG
AGAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGT
CCGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATA
CCTGTTGTAGTATGATTTTTGGAAAGCCTTCCAAACCCACACCACAGATT
GC
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