FC929542

Overview
NameFC929542
Unique NameFC929542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15044 contig Ccv1_Contig15044:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929542 vs. ExPASy Swiss-Prot
Match: BRE_CERAE (BRCA1-A complex subunit BRE OS=Cercopithecus aethiops GN=BRE PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:   97 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 525
            KL  +P ++ +L     + +P +  G C+ +Y+P +   L  +V   +     RR +I A    FG  + E D+  + K    +    F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361
[Close]
BLAST of FC929542 vs. ExPASy Swiss-Prot
Match: BRE_BOVIN (BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 44/145 (30.34%), Postives = 73/145 (50.34%), Query Frame = 1 
Query:   97 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEETLERQVSEAVSLIEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAER 525
            KL  +P ++ +L     + +P +  G C+ +Y+P +   L  +V   +     RR +I A    FG  + E D+  + K    +    F FLV   L   FP+ QP+L  QS  +F + G  + S    +YP+SPRW+ ++MA+R
Sbjct:  218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNSGQ-LYSQAQKNYPYSPRWDGNEMAKR 361
The following BLAST results are available for this feature:
BLAST of FC929542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BRE_CERAE6.179e-1130.34BRCA1-A complex subunit BRE OS=Cercopithecus aethi... [more]
BRE_BOVIN6.179e-1130.34BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929542 ID=FC929542; Name=FC929542; organism=Citrus clementina; type=EST; length=798bp
GTGGGGTGCCCCTGGAGACATCCACAGAAAATATCCTTGCAGGTCATATA
TCCTGTTAATAGAAAGTATGTTTCTGCTCCTTCAGCACCTCATCTTAAAT
TAATGTCAACACCTGCGTTGAAGTCACTGTTTTCTGTTGATGATGTCAAA
CTTCCTCCATGGTTGGACGGAATGTGTATGGCTGAATACCTTCCCCATCT
AGAAGAAACCCTTGAGAGACAGGTCTCAGAGGCAGTTTCATTAATCGAAG
TTAGAAGACGCTTTATTGAAGCATTAGCTCCTCTATTTGGAAGACCGATA
GAGACTGATTCGGTTTTTTACAGAAAGTCTATGTTTTTTGTTGCCTCTGG
TGCTTTCTCATTCTTGGTGCTATTTTTCCTTTCAACTCAATTTCCAAAGC
AGCAGCCATCTCTCATGCTTCAAAGTTCCATGTATTTCAACTCTCAAGGC
ATGCCGATCAAATCACCCCTTCTGACAGATTATCCTTGGAGTCCAAGATG
GGAACATTCACAAATGGCTGAGAGAACATTTGAATTTTTGGTTGATGAAT
CTGTAAACTTTAAAAAGTACTGCAACGAAGCCCAACTTCAACAGAACCAA
CACTAGTGCATTGTCATGGCAGAATTAGCCTTTCATTTGTTTTAGCCCAT
AGTACCCATTCAAAGTTGTGTAATGTGTGGAACCTGTATTCTCGAATTCT
TTTCCTTGACATTTGTATAAGCTTTTGTCTCGGTGTTGGTATAATTTTCA
TTAGCCTTTGGTGTTGTATTTGTTCATAAAGAAATGAAGCAACTCAAT
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