FC929548

Overview
NameFC929548
Unique NameFC929548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: FYN_HUMAN (Proto-oncogene tyrosine-protein kinase Fyn OS=Homo sapiens GN=FYN PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 70/198 (35.35%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G+G FG V+         VA+K L    T     F  E + + K+KH  LV L  Y    EE + +V EYM  GSL  +L++  G    L       +A   A G+A++      + IHRD++++NIL+      K+ADFGLARLI   E            +  PE    GR T + DV+SFG++L ELVT G+ P
Sbjct:  277 LGNGQFGEVWMGTWNGNTKVAIKTLKPG-TMSPESFLEEAQIMKKLKHDKLVQL--YAVVSEEPIYIVTEYMNKGSLLDFLKDGEG--RALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 466          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: FYN_BOVIN (Proto-oncogene tyrosine-protein kinase Fyn OS=Bos taurus GN=FYN PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 70/198 (35.35%), Postives = 99/198 (50.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G+G FG V+         VA+K L    T     F  E + + K+KH  LV L  Y    EE + +V EYM  GSL  +L++  G    L       +A   A G+A++      + IHRD++++NIL+      K+ADFGLARLI   E            +  PE    GR T + DV+SFG++L ELVT G+ P
Sbjct:  277 LGNGQFGEVWMGTWNGNTKVAIKTLKPG-TMSPESFLEEAQIMKKLKHDKLVQL--YAVVSEEPIYIVTEYMNKGSLLDFLKDGEG--RALKLPNLVDMAAQVAAGMAYIER---MNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP 466          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: NTRK2_RAT (BDNF/NT-3 growth factors receptor OS=Rattus norvegicus GN=Ntrk2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 65/213 (30.52%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   72 IGDGGFGTVYKAAL------PDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEV---------LGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETH-VSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G+G FG V+ A         D   VAVK L  A     ++F  E E L  ++H+++V   G C  G+  ++V+EYM +G L+ +LR       +         L   +   IA   A G+ +L    + H +HRD+   N L+ E    K+ DFG++R + + + + V         ++PPE     + TT  DV+S GV+L E+ T GK+P
Sbjct:  543 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 752          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: NTRK2_MOUSE (BDNF/NT-3 growth factors receptor OS=Mus musculus GN=Ntrk2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 65/213 (30.52%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   72 IGDGGFGTVYKAAL------PDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEV---------LGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETH-VSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G+G FG V+ A         D   VAVK L  A     ++F  E E L  ++H+++V   G C  G+  ++V+EYM +G L+ +LR       +         L   +   IA   A G+ +L    + H +HRD+   N L+ E    K+ DFG++R + + + + V         ++PPE     + TT  DV+S GV+L E+ T GK+P
Sbjct:  543 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 752          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: NTRK2_HUMAN (BDNF/NT-3 growth factors receptor OS=Homo sapiens GN=NTRK2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 65/213 (30.52%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   72 IGDGGFGTVYKAAL------PDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEV---------LGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETH-VSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G+G FG V+ A         D   VAVK L  A     ++F  E E L  ++H+++V   G C  G+  ++V+EYM +G L+ +LR       +         L   +   IA   A G+ +L    + H +HRD+   N L+ E    K+ DFG++R + + + + V         ++PPE     + TT  DV+S GV+L E+ T GK+P
Sbjct:  544 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 753          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: M3K9_MOUSE (Mitogen-activated protein kinase kinase kinase 9 OS=Mus musculus GN=Map3k9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 76/222 (34.23%), Postives = 112/222 (50.45%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKTVAVKKL----SQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVL-GWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFE--------AKVADFGLARLISACETHVSTDI--AGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPEFKDIEG 689
            IIG GGFG VY+A    G  VAVK       +  +Q       E +    +KH N++ L G C       LV E+   G L+  L  +    ++L  W      A   ARG+ +LH      IIHRD+K+SNIL+ ++ E         ++ DFGLAR     E H +T +  AGT+ ++ PE  ++   +   DV+S+GV+L EL+TG+ P    F+ I+G
Sbjct:  142 IIGIGGFGKVYRAFWA-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNW------AVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILEITDFGLAR-----EWHRTTKMSAAGTYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP----FRGIDG 347          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: FGR_MOUSE (Proto-oncogene tyrosine-protein kinase Fgr OS=Mus musculus GN=Fgr PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 71/206 (34.47%), Postives = 104/206 (50.49%), Query Frame = 3
Query:   48 NNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            N+      +G G FG V+         VAVK L    T   + F  E + +  ++H  LV L  Y    EE + +V E+M  GSL  +L++R G   +L       +A   A G+A++      + IHRD++A+NIL+ E    K+ADFGLARLI   E +          +  PE    GR T + DV+SFG++L EL+T G+ P
Sbjct:  249 NSIALERRLGTGCFGDVWLGTWNCSTKVAVKTLKPG-TMSPKAFLEEAQIMKLLRHDKLVQL--YAVVSEEPIYIVTEFMCYGSLLDFLKDREGQNLML--PHLVDMAAQVAEGMAYMER---MNYIHRDLRAANILVGEYLICKIADFGLARLIEDNEYNPQQGTKFPIKWTAPEAALFGRFTVKSDVWSFGILLTELITKGRVP 446          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPHA7_RAT (Ephrin type-A receptor 7 OS=Rattus norvegicus GN=Epha7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 70/206 (33.98%), Postives = 108/206 (52.43%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGK---TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFL-HHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTF--GYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F  E   +G+  H N+V L G  + G+  ++V E+M NG+LD +LR   G   V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R+I      V T   G     +  PE  Q  + T+  DV+S+G+++ E+++ G+ P
Sbjct:  638 VIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVI---QLVGMLRGIAAGMRYLADMGY----VHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 836          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPHA7_HUMAN (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.708e-19
Identity = 70/206 (33.98%), Postives = 108/206 (52.43%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGK---TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFL-HHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTF--GYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F  E   +G+  H N+V L G  + G+  ++V E+M NG+LD +LR   G   V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R+I      V T   G     +  PE  Q  + T+  DV+S+G+++ E+++ G+ P
Sbjct:  638 VIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVI---QLVGMLRGIAAGMRYLADMGY----VHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 836          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: Y5020_ARATH (Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.760e-19
Identity = 67/234 (28.63%), Postives = 115/234 (49.15%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYC--SFGEEKLLVYEYMVNGSLDLWLRNRT-GSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNE-EFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGR--STTRGDVYSFGVILLELVTGKEPTGPEFKDIEGGNLVGWVFQKMKKGQAADVLD 752
            ++G    GT+YKA L +G  + VK L     +  ++F  E + +G +KH N+VPL  Y      +E+LL+ +Y+   SL + L   T      + + +R K+A   A+ L +LH    P   H ++K +NI+L+  +   ++ D+ + RL++              GY  PE   + +   T + DVY+FGVIL+EL+T +             +L  WV    ++G+  D +D
Sbjct:  773 VLGRSSHGTLYKATLDNGHMLTVKWLRVGLVRHKKDFAREAKKIGSLKHPNIVPLRAYYWGPREQERLLLSDYLRGESLAMHLYETTPRRYSPMSFSQRLKVAVEVAQCLLYLHDRAMP---HGNLKPTNIILSSPDNTVRITDYCVHRLMTPSGVAEQILNMSALGYSAPELSSASKPIPTLKSDVYAFGVILMELLTRRSAGDIISGQTGAVDLTDWVRLCDQEGRRMDCID 1003          
The following BLAST results are available for this feature:
BLAST of FC929548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FYN_HUMAN5.136e-1935.35Proto-oncogene tyrosine-protein kinase Fyn OS=Homo... [more]
FYN_BOVIN5.136e-1935.35Proto-oncogene tyrosine-protein kinase Fyn OS=Bos ... [more]
NTRK2_RAT6.708e-1930.52BDNF/NT-3 growth factors receptor OS=Rattus norveg... [more]
NTRK2_MOUSE6.708e-1930.52BDNF/NT-3 growth factors receptor OS=Mus musculus ... [more]
NTRK2_HUMAN6.708e-1930.52BDNF/NT-3 growth factors receptor OS=Homo sapiens ... [more]
M3K9_MOUSE6.708e-1934.23Mitogen-activated protein kinase kinase kinase 9 O... [more]
FGR_MOUSE6.708e-1934.47Proto-oncogene tyrosine-protein kinase Fgr OS=Mus ... [more]
EPHA7_RAT6.708e-1933.98Ephrin type-A receptor 7 OS=Rattus norvegicus GN=E... [more]
EPHA7_HUMAN6.708e-1933.98Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 ... [more]
Y5020_ARATH8.760e-1928.63Probable inactive receptor kinase At5g10020 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929548 ID=FC929548; Name=FC929548; organism=Citrus clementina; type=EST; length=846bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAGAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CGGTTGGGTGTTTCAGAAGATGAAGAAGGGACAGGCTGCTGATGTTCTAG
ATCCTACAGTCCTTACTGCAGATTCAAAGCCCATGATGCTTAAAATGCTC
CGGATTGCTGGTGATTGCCTCTCTGATAACCCTGCTATGAGGCCTA
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