FC929548

Overview
NameFC929548
Unique NameFC929548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15034 contig Ccv1_Contig15034:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPHB1_CHICK (Ephrin type-B receptor 1 (Fragment) OS=Gallus gallus GN=EPHB1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 67/208 (32.21%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIP-----PEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG VYK  L   GK    VA+K L    ++  R +F +E   +G+  H N++ L G  +     +++ E+M NG+LD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP     PE     + T+  DV+S+G+++ E+++ G+ P
Sbjct:  624 VIGAGEFGEVYKGRLKLPGKREIYVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYLAE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQD-DTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSFGERP 824          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: ARKA_DICDI (Ankyrin repeat-containing protein kinase A OS=Dictyostelium discoideum GN=arkA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.348e-18
Identity = 66/196 (33.67%), Postives = 93/196 (47.45%), Query Frame = 3
Query:   63 TNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHRE-FTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELV 644
            T  IG G  G V+K  +  G+ VA+K L  A  +  RE F  E   L  ++   +V L G     E K+ LV EY  NGS+   +R    S     W++ +        G+  LH   TP ++HRDIK  N L+N   + KVADFGL+R  +           GT  Y  PE  +      R D+YS G+++ E+V
Sbjct: 1115 TEKIGSGASGKVFKG-IYRGRVVAIKVLKSADDEMTREDFLKEFGVLASLESHTIVGLYGVVL--EPKICLVMEYCSNGSIYHSIRKNPPS-----WERFFSFVQQMLAGINALHQS-TPQVLHRDIKTLNFLVNHNNKVKVADFGLSRFNTESNQETLNKTRGTSVYCAPEVFEGKEYNERSDMYSMGIVMWEIV 1301          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: TNI3K_HUMAN (Serine/threonine-protein kinase TNNI3K OS=Homo sapiens GN=TNNI3K PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 67/203 (33.00%), Postives = 106/203 (52.22%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHRE----FTAEMETLGKVKHQNLVPLLGYCSFGEEKL-LVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPE-YGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            IIG G FG VYK    + K VA+K+  +A T   +     F  E+  L ++ H  ++  +G C     +  +V +Y+  GSL   L  +     +L    +  IA   A+G+ +LH+  T  IIHRD+ + NILL E+  A VADFG +R + + +    T   G   ++ PE + Q  R T + DV+S+ + L E++TG+ P
Sbjct:  569 IIGSGSFGKVYKGRCRN-KIVAIKRY-RANTYCSKSDVDMFCREVSILCQLNHPCVIQFVGACLNDPSQFAIVTQYISGGSLFSLLHEQK---RILDLQSKLIIAVDVAKGMEYLHN-LTQPIIHRDLNSHNILLYEDGHAVVADFGESRFLQSLDEDNMTKQPGNLRWMAPEVFTQCTRYTIKADVFSYALCLWEILTGEIP 765          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: SRK4_SPOLA (Tyrosine-protein kinase isoform SRK4 OS=Spongilla lacustris GN=SRK1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 75/259 (28.96%), Postives = 113/259 (43.63%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEPTGPEFKDIEGGNLVGWVFQKMKKGQAADVLDPTVLTADSKPMMLKMLRIAGDCLSDNPAMRP 845
            +G G FG V++       +VAVK L    T    EF  E   + +++H  L+ L   C+  E   +V E M +GSL  +LR    SL++        +    A G+++L      + IHRD+ A NIL+ E    KVADFGLAR+I                +  PE     R T + DV+SFG++L E++T G+ P                 +  M   Q  + +  +           K+  I  DC  ++PA RP
Sbjct:  246 LGAGQFGEVWEGLWNGTTSVAVKTLKPG-TMSIEEFLEEASIMKQLRHPKLIQLYAVCTKEEPIYIVTELMKHGSLLEYLRGDGRSLKL---PDLVDMCSQVASGMSYLEQ---QNYIHRDLAARNILVGEHKICKVADFGLARVIDEEIYEAKLGAKFPIKWTAPEAAMYSRFTIKSDVWSFGIVLYEVITYGRFP-----------------YPGMTNAQVLEQIQQSYRMPRPMGCPEKLYAIMMDCWREDPASRP 480          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MLTK_MOUSE (Mitogen-activated protein kinase kinase kinase MLT OS=Mus musculus GN=Mltk PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 71/223 (31.84%), Postives = 114/223 (51.12%), Query Frame = 3
Query:   75 GDGGFGTVYKAA-LPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSL-DLWLRNRTGSLE---VLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPEFKDIEGGNLVGWVFQKMKK 728
            G G FG+VY+A  +   K VAVKKL + +         E E L  + H+N++   G         +V EY   GSL D    NR+  ++   ++ W      A   A+G+ +LH      +IHRD+K+ N+++  +   K+ DFG +R  +   TH+S  + GTF ++ PE  QS   +   D YS+GV+L E++T + P    FK +EG  +   V +K ++
Sbjct:   23 GGGSFGSVYRAKWISQDKEVAVKKLLKIEK--------EAEILSVLSHRNIIQFYGVILEPPNYGIVTEYASLGSLYDYINSNRSEEMDMEHIMTW------ATDVAKGMHYLHMEAPVKVIHRDLKSRNVVIAADGVLKICDFGASRFHNH-TTHMS--LVGTFPWMAPEVIQSLPVSETCDTYSYGVVLWEMLTREVP----FKGLEGLQVAWLVVEKNER 224          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_RAT (Hepatocyte growth factor receptor OS=Rattus norvegicus GN=Met PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 73/213 (34.27%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQ-AKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    +   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDSDGKKIHCAVKSLNRITDIEEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYL---VSKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: LYN_HUMAN (Tyrosine-protein kinase Lyn OS=Homo sapiens GN=LYN PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G G FG V+     +   VAVK L    T   + F  E   +  ++H  LV L    +  E   ++ EYM  GSL  +L++  G   +L   K    +   A G+A++      + IHRD++A+N+L++E    K+ADFGLAR+I   E            +  PE    G  T + DV+SFG++L E+VT GK P
Sbjct:  253 LGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIP 443          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: LCK_CHICK (Proto-oncogene tyrosine-protein kinase LCK OS=Gallus gallus GN=LCK PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 73/213 (34.27%), Postives = 106/213 (49.77%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP----TGPE-FKDIEGG 692
            +G G FG V+         VA+K L Q  +     F AE   +  ++H  LV L    +  E   ++ EYM  GSL  +L+   G    L  +K   +A   A G+AF+      + IHRD++A+NIL++E    K+ADFGLARLI   E            +  PE    G  T + DV+SFG++L E+VT G+ P    T PE  +++E G
Sbjct:  250 LGAGQFGEVWMGFYNGHTKVAIKNLKQG-SMSPSAFLAEANLMKNLQHPRLVRLYAVVT-KEPIYIITEYMEKGSLVDFLKTSEGIK--LSINKLLDMAAQIAEGMAFIE---AKNYIHRDLRAANILVSEALCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERG 455          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPHA3_RAT (Ephrin type-A receptor 3 OS=Rattus norvegicus GN=Epha3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 70/217 (32.26%), Postives = 111/217 (51.15%), Query Frame = 3
Query:   36 LEATNNFCKTNIIGDGGFGTVY--KAALPDGK--TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHH-GFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTF--GYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            L+ATN      ++G G FG V   +  LP  K  +VA+K L    T+  R +F  E   +G+  H N++ L G  +  +  ++V EYM NGSLD +LR       V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R++        T   G     +  PE     + T+  DV+S+G++L E+++ G+ P
Sbjct:  617 LDATN-IAIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVI---QLVGMLRGIASGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPVRWTSPEATAYRKFTSASDVWSYGIVLWEVMSYGERP 825          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: CDC15_YEAST (Cell division control protein 15 OS=Saccharomyces cerevisiae GN=CDC15 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.678e-18
Identity = 62/199 (31.16%), Postives = 104/199 (52.26%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPD-GKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLD-LWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            +IG G +G VYKA      + VA+K++     +   +  AE+  L  + H N+V   G+     E  ++ EY  NGSL  L  R+ TG  E    ++          GL +LH      +IHRDIKA+NILL+ +   K+ADFG++ ++++     +  +AGT  ++ PE   +  ++T  D++S G  ++E++T   P
Sbjct:   30 VIGRGSYGVVYKAINKHTDQVVAIKEVVYENDEELNDIMAEISLLKNLNHNNIVKYHGFIRKSYELYILLEYCANGSLRRLISRSSTGLSE----NESKTYVTQTLLGLKYLHG---EGVIHRDIKAANILLSADNTVKLADFGVSTIVNSS----ALTLAGTLNWMAPEILGNRGASTLSDIWSLGATVVEMLTKNPP 217          
The following BLAST results are available for this feature:
BLAST of FC929548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EPHB1_CHICK4.348e-1832.21Ephrin type-B receptor 1 (Fragment) OS=Gallus gall... [more]
ARKA_DICDI4.348e-1833.67Ankyrin repeat-containing protein kinase A OS=Dict... [more]
TNI3K_HUMAN5.678e-1833.00Serine/threonine-protein kinase TNNI3K OS=Homo sap... [more]
SRK4_SPOLA5.678e-1828.96Tyrosine-protein kinase isoform SRK4 OS=Spongilla ... [more]
MLTK_MOUSE5.678e-1831.84Mitogen-activated protein kinase kinase kinase MLT... [more]
MET_RAT5.678e-1834.27Hepatocyte growth factor receptor OS=Rattus norveg... [more]
LYN_HUMAN5.678e-1832.99Tyrosine-protein kinase Lyn OS=Homo sapiens GN=LYN... [more]
LCK_CHICK5.678e-1834.27Proto-oncogene tyrosine-protein kinase LCK OS=Gall... [more]
EPHA3_RAT5.678e-1832.26Ephrin type-A receptor 3 OS=Rattus norvegicus GN=E... [more]
CDC15_YEAST5.678e-1831.16Cell division control protein 15 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929548 ID=FC929548; Name=FC929548; organism=Citrus clementina; type=EST; length=846bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAGAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CGGTTGGGTGTTTCAGAAGATGAAGAAGGGACAGGCTGCTGATGTTCTAG
ATCCTACAGTCCTTACTGCAGATTCAAAGCCCATGATGCTTAAAATGCTC
CGGATTGCTGGTGATTGCCTCTCTGATAACCCTGCTATGAGGCCTA
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