FC929548

Overview
NameFC929548
Unique NameFC929548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15034 contig Ccv1_Contig15034:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_SHEEP (Hepatocyte growth factor receptor OS=Ovis aries GN=MET PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMEYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_PIG (Hepatocyte growth factor receptor OS=Sus scrofa GN=MET PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1083 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1286          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_MUNMU (Hepatocyte growth factor receptor OS=Muntiacus muntjak GN=MET PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMEYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_BOVIN (Hepatocyte growth factor receptor OS=Bos taurus GN=MET PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMEYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPHB2_CHICK (Ephrin type-B receptor 2 OS=Gallus gallus GN=EPHB2 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.416e-18
Identity = 68/208 (32.69%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIP-----PEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F +E   +G+  H N++ L G  +     +++ E+M NGSLD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP     PE  Q  + T+  DV+S+G+++ E+++ G+ P
Sbjct:  644 VIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSSPVMIITEFMENGSLDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYL---ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED-DTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERP 844          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 61/218 (27.98%), Postives = 109/218 (50.00%), Query Frame = 3
Query:    6 PLMRLTLVHILEATNNFCKTNIIGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLH-HGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKE 656
            PL + +   +  ATN+F   NI+ D     V+K  L +G  VA+K+ +       + F  E + +GK++H+ LV L+GYC  G+++ LV ++M N +L   L  R    + + W  R ++A   A  L + +  GF     + ++ A  +L +E+ +A ++ FGL + I+  +         T G + PE            +Y FG +L+ L++GK+
Sbjct:   34 PLTKFSFSALKTATNHFSPENIVSDQTSDVVFKGRLQNGGFVAIKRFNNMAWSDPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQR--KYQTMDWSIRLRVAYFVAEALDYCNTAGFAS---YNNLSAYKVLFDEDGDACLSCFGLMKEINNDQI--------TTGSVNPE----------NVIYRFGTVLVNLLSGKQ 228          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_RHIFE (Hepatocyte growth factor receptor OS=Rhinolophus ferrumequinum GN=MET PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 72/213 (33.80%), Postives = 107/213 (50.23%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1083 VIGRGHFGCVYHGTLLDNDDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDENFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1286          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_MOUSE (Hepatocyte growth factor receptor OS=Mus musculus GN=Met PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 73/213 (34.27%), Postives = 111/213 (52.11%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGKTV--AVKKLSQ-AKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L   DGK +  AVK L++    +   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1081 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIEEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1284          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: MET_LOXAF (Hepatocyte growth factor receptor OS=Loxodonta africana GN=MET PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 72/213 (33.80%), Postives = 108/213 (50.70%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALPDGKT----VAVKKLSQAKTQGH-REFTAEMETLGKVKHQNLVPLLGYCSFGE-EKLLVYEYMVNGSLDLWLRNRTGS---LEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE---THVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPE 671
            +IG G FG VY   L D        AVK L++    G   +F  E   +    H N++ LLG C   E   L+V  YM +G L  ++RN T +    +++G+  +       A+G+ +L    +   +HRD+ A N +L+E+F  KVADFGLAR +   E    H  T       ++  E  Q+ + TT+ DV+SFGV+L EL+T   P  P+
Sbjct: 1084 VIGRGHFGCVYHGTLLDNGDKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQ------VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDVYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD 1287          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: M313A_XENLA (Mitogen-activated protein kinase kinase kinase 13-A OS=Xenopus laevis GN=map3k13-A PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.686e-18
Identity = 63/212 (29.72%), Postives = 109/212 (51.42%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLR--NRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPEFKDIEGGNLV 701
            +G G  G V+      G+ VA+KK+ + K         +++ L K+KH N++   G C+      L+ EY  +G L   LR   +     ++ W        G A G+ +LH      IIHRD+K+ N+L+      K++DFG ++ +S   T +S   AGT  ++ PE  ++   + + D++SFGV+L EL+TG+ P    +KD++   ++
Sbjct:  175 LGSGAQGAVFLGKFR-GEEVAIKKVREQKE-------TDIKHLRKLKHPNIIAFKGVCTQAPCYCLIMEYCAHGQLYEVLRAGRKVSPRLLVDWSN------GIASGMNYLH---LHKIIHRDLKSPNVLVTHTDTVKISDFGTSKELSDKSTKMS--FAGTVAWMAPEVIRNEPVSEKVDIWSFGVLLWELLTGEIP----YKDVDSSAII 363          
The following BLAST results are available for this feature:
BLAST of FC929548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_SHEEP7.416e-1833.80Hepatocyte growth factor receptor OS=Ovis aries GN... [more]
MET_PIG7.416e-1833.80Hepatocyte growth factor receptor OS=Sus scrofa GN... [more]
MET_MUNMU7.416e-1833.80Hepatocyte growth factor receptor OS=Muntiacus mun... [more]
MET_BOVIN7.416e-1833.80Hepatocyte growth factor receptor OS=Bos taurus GN... [more]
EPHB2_CHICK7.416e-1832.69Ephrin type-B receptor 2 OS=Gallus gallus GN=EPHB2... [more]
SSP_ARATH9.686e-1827.98Probable inactive receptor-like kinase SSP OS=Arab... [more]
MET_RHIFE9.686e-1833.80Hepatocyte growth factor receptor OS=Rhinolophus f... [more]
MET_MOUSE9.686e-1834.27Hepatocyte growth factor receptor OS=Mus musculus ... [more]
MET_LOXAF9.686e-1833.80Hepatocyte growth factor receptor OS=Loxodonta afr... [more]
M313A_XENLA9.686e-1829.72Mitogen-activated protein kinase kinase kinase 13-... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929548 ID=FC929548; Name=FC929548; organism=Citrus clementina; type=EST; length=846bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAGAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CGGTTGGGTGTTTCAGAAGATGAAGAAGGGACAGGCTGCTGATGTTCTAG
ATCCTACAGTCCTTACTGCAGATTCAAAGCCCATGATGCTTAAAATGCTC
CGGATTGCTGGTGATTGCCTCTCTGATAACCCTGCTATGAGGCCTA
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