FC929548

Overview
NameFC929548
Unique NameFC929548
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15034 contig Ccv1_Contig15034:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: HCK_MOUSE (Tyrosine-protein kinase HCK OS=Mus musculus GN=Hck PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT 647
            +G G FG V+ A       VAVK +    +     F AE   +  ++H  LV L    S  E   +V E+M  GSL  +L++  GS + L   K    +   + G+AF+      + IHRD++A+NIL++     K+ADFGLAR+I   E            +  PE    G  T + DV+SFG++L+E+VT
Sbjct:  266 LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANLMKSLQHDKLVKLHAVVS-QEPIFIVTEFMAKGSLLDFLKSEEGSKQPL--PKLIDFSAQISEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARIIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 450          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPHA5_MOUSE (Ephrin type-A receptor 5 OS=Mus musculus GN=Epha5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 67/206 (32.52%), Postives = 105/206 (50.97%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAALP-DGKT---VAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHH-GFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAG--TFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG V    L   GK    VA+K L    T+  R +F  E   +G+  H N++ L G  +  +  ++V EYM NGSLD +L+   G   V+   +   +  G A G+ +L   G+    +HRD+ A NIL+N     KV+DFGL+R++        T   G     +  PE     + T+  DV+S+G+++ E+V+ G+ P
Sbjct:  519 VIGAGEFGEVCSGCLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVI---QLVGMLRGIAAGMKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSYGERP 717          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: EPB1A_XENLA (Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ephb1-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 64/208 (30.77%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   69 IIGDGGFGTVYKAAL--PDGK--TVAVKKLSQAKTQGHR-EFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQS-----GRSTTRGDVYSFGVILLELVT-GKEP 659
            +IG G FG VYK  L  P  +  +VA+K L    ++  R +F +E   +G+  H N++ L G  +     +++ E+M NG+LD +LR   G   V+   +   +  G A G+ +L      + +HRD+ A NIL+N     KV+DFGL+R +   +T   T  +   G IP  +         + T+  DV+S+G+++ E+++ G+ P
Sbjct:  625 VIGAGEFGEVYKGRLKLPSKREISVAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVI---QLVGMLRGIAAGMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQD-DTSDPTYTSSLGGKIPVRWTAQEAIAYRKFTSASDVWSYGIVMWEVMSYGERP 825          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: BRAF1_MOUSE (B-Raf proto-oncogene serine/threonine-protein kinase OS=Mus musculus GN=Braf PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE-THVSTDIAGTFGYIPPE---YGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            IG G FGTVYK        V +  ++    Q  + F  E+  L K +H N++  +GY S   +  +V ++    SL   L       E++   K   IA   A+G+ +LH      IIHRD+K++NI L+E+   K+ DFGLA + S    +H    ++G+  ++ PE          + + DVY+FG++L EL+TG+ P
Sbjct:  500 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 692          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: BRAF1_HUMAN (B-Raf proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=BRAF PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE-THVSTDIAGTFGYIPPE---YGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            IG G FGTVYK        V +  ++    Q  + F  E+  L K +H N++  +GY S   +  +V ++    SL   L       E++   K   IA   A+G+ +LH      IIHRD+K++NI L+E+   K+ DFGLA + S    +H    ++G+  ++ PE          + + DVY+FG++L EL+TG+ P
Sbjct:  463 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 655          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: BRAF1_COTJA (B-Raf proto-oncogene serine/threonine-protein kinase OS=Coturnix coturnix japonica GN=BRAF PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE-THVSTDIAGTFGYIPPE---YGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            IG G FGTVYK        V +  ++    Q  + F  E+  L K +H N++  +GY S   +  +V ++    SL   L       E++   K   IA   A+G+ +LH      IIHRD+K++NI L+E+   K+ DFGLA + S    +H    ++G+  ++ PE          + + DVY+FG++L EL+TG+ P
Sbjct:  503 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 695          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: BRAF1_CHICK (B-Raf proto-oncogene serine/threonine-protein kinase OS=Gallus gallus GN=BRAF PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.652e-17
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACE-THVSTDIAGTFGYIPPE---YGQSGRSTTRGDVYSFGVILLELVTGKEP 659
            IG G FGTVYK        V +  ++    Q  + F  E+  L K +H N++  +GY S   +  +V ++    SL   L       E++   K   IA   A+G+ +LH      IIHRD+K++NI L+E+   K+ DFGLA + S    +H    ++G+  ++ PE          + + DVY+FG++L EL+TG+ P
Sbjct:  503 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 695          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: STE7_YEAST (Serine/threonine-protein kinase STE7 OS=Saccharomyces cerevisiae GN=STE7 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 71/214 (33.18%), Postives = 108/214 (50.47%), Query Frame = 3
Query:   72 IGDGGFGTVYKAA-LPDGKTVAVKKL--SQAKTQGHREFTAEMETLGKVK-HQNLVPLLGYC---SFGEEKLLVYEYMVNGSLD--LWLRNRTGSLEVLGWDKRY-------KIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTG 665
            IG G  GTV KA  +PD K VA K +   Q  +    +   E+  +  VK H+N++   G         E +++ EY   GSLD  L +  R      +   K +       KIA G   GL  L+  +   IIHRDIK SN+L+N + + K+ DFG+++ +      ++    GT  Y+ PE  Q    + +GDV+S G++++ELVTG+ P G
Sbjct:  197 IGAGNSGTVVKALHVPDSKIVAKKTIPVEQNNSTIINQLVRELSIVKNVKPHENIITFYGAYYNQHINNEIIILMEYSDCGSLDKILSVYKRFVQRGTVSSKKTWFNELTISKIAYGVLNGLDHLYRQYK--IIHRDIKPSNVLINSKGQIKLCDFGVSKKLI---NSIADTFVGTSTYMSPERIQGNVYSIKGDVWSLGLMIIELVTGEFPLG 405          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: HCK_RAT (Tyrosine-protein kinase HCK OS=Rattus norvegicus GN=Hck PE=2 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHVSTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT 647
            +G G FG V+ A       VAVK +    +     F AE   +  ++H  LV L    S  E   +V E+M  GSL  +L++  GS + L   K    +   + G+AF+      + IHRD++A+NIL++     K+ADFGLAR+I   E            +  PE    G  T + DV+SFG++L+E+VT
Sbjct:  266 LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANLMKTLQHDKLVKLHAVVS-QEPIFIVTEFMAKGSLLDFLKSEEGSKQPL--PKLIDFSAQISEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARIIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 450          
BLAST of FC929548 vs. ExPASy Swiss-Prot
Match: FRK_RAT (Tyrosine-protein kinase FRK OS=Rattus norvegicus GN=Frk PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 62/200 (31.00%), Postives = 104/200 (52.00%), Query Frame = 3
Query:   72 IGDGGFGTVYKAALPDGKTVAVKKLSQAKTQGHREFTAEMETLGKVKHQNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGSLEVLGWDKRYKIACGAARGLAFLHHGFTPHIIHRDIKASNILLNEEFEAKVADFGLARLISACETHV---STDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVT-GKEP 659
            +G G FG V++    +   VAVK L       + +F  E + +  ++H  L+ L   C+  +   ++ E M +GSL  +L+N  GS   L   ++  +A   A G+A+L    + + IHRD+ A N+L+ E    KVADFGLAR+       +     +I     +  PE  ++ + + + DV+SFG++L E++T GK P
Sbjct:  241 LGSGQFGEVWEGLWNNTTPVAVKTLKPGSMDPN-DFLREAQIMKSLRHPKLIQLYAVCTLEDPIYIITELMRHGSLQEYLQNDGGSKIRL--TQQVDMAAQVASGMAYLE---SQNYIHRDLAARNVLVGEHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWTAPEAIRTNKFSIKSDVWSFGILLYEIITYGKMP 434          
The following BLAST results are available for this feature:
BLAST of FC929548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HCK_MOUSE1.652e-1733.33Tyrosine-protein kinase HCK OS=Mus musculus GN=Hck... [more]
EPHA5_MOUSE1.652e-1732.52Ephrin type-A receptor 5 OS=Mus musculus GN=Epha5 ... [more]
EPB1A_XENLA1.652e-1730.77Ephrin type-B receptor 1-A OS=Xenopus laevis GN=ep... [more]
BRAF1_MOUSE1.652e-1732.00B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_HUMAN1.652e-1732.00B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_COTJA1.652e-1732.00B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_CHICK1.652e-1732.00B-Raf proto-oncogene serine/threonine-protein kina... [more]
STE7_YEAST2.158e-1733.18Serine/threonine-protein kinase STE7 OS=Saccharomy... [more]
HCK_RAT2.158e-1733.33Tyrosine-protein kinase HCK OS=Rattus norvegicus G... [more]
FRK_RAT2.158e-1731.00Tyrosine-protein kinase FRK OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DA09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929548 ID=FC929548; Name=FC929548; organism=Citrus clementina; type=EST; length=846bp
AGCAACCTCTCATGAGACTAACTTTGGTTCATATTCTTGAAGCCACAAAC
AACTTCTGCAAGACAAATATTATTGGAGATGGTGGCTTTGGAACTGTATA
CAAAGCCGCTTTGCCTGATGGGAAAACAGTTGCTGTTAAGAAGTTAAGCC
AGGCTAAAACACAGGGGCACCGTGAATTCACTGCTGAAATGGAAACTCTG
GGCAAGGTGAAGCACCAGAATCTTGTGCCGCTGCTTGGTTACTGCTCATT
TGGTGAGGAGAAGCTTCTTGTTTATGAATACATGGTAAATGGAAGCTTGG
ATCTGTGGTTAAGAAATCGGACGGGTTCTCTTGAAGTTCTTGGCTGGGAT
AAACGCTACAAAATTGCATGTGGCGCTGCTCGTGGGCTAGCTTTTCTTCA
TCACGGCTTCACCCCACATATCATTCATCGCGATATCAAAGCAAGCAACA
TCTTACTCAATGAAGAGTTTGAAGCCAAAGTTGCAGACTTTGGGCTTGCT
AGACTGATCAGTGCATGCGAGACACATGTTAGCACTGATATTGCAGGCAC
ATTTGGTTACATTCCCCCCGAGTATGGGCAGAGTGGGAGATCTACCACAA
GGGGTGATGTATACAGCTTTGGTGTAATCTTGCTGGAATTGGTGACTGGA
AAAGAGCCTACGGGGCCCGAATTCAAAGATATAGAAGGTGGGAACTTGGT
CGGTTGGGTGTTTCAGAAGATGAAGAAGGGACAGGCTGCTGATGTTCTAG
ATCCTACAGTCCTTACTGCAGATTCAAAGCCCATGATGCTTAAAATGCTC
CGGATTGCTGGTGATTGCCTCTCTGATAACCCTGCTATGAGGCCTA
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