FC929561

Overview
NameFC929561
Unique NameFC929561
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATNA_DROME (Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster GN=Atpalpha PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 48/137 (35.04%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +       +    +PL  V +L ++L  D + A++LA E     +M+R P   R+P    ++   L+  A  Q+ ++
Sbjct:  745 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLAFILCDIPLPLGTVTILCIDLGTDMVPAISLAYEHAEADIMKRPP---RDPFNDKLVNSRLISMAYGQIGMI 878          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: AT1A_HYDAT (Sodium/potassium-transporting ATPase subunit alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 47/137 (34.31%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +    +PL  + +L ++L  D + A++LA E     +M+R P   R P+   ++   L+  A  Q+ ++
Sbjct:  735 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIVYTLTSNIPEISPFLMFILFGIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRHP---RNPIRDKLVNERLISLAYGQIGMM 868          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATN5_YEAST (Sodium transport ATPase 5 OS=Saccharomyces cerevisiae GN=ENA5 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAA---LVINFVAAVSSGD--VPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSP 562
            A++G+AMGI G++V+KE+SDI++ DDNFAS++  V  GR +  NIQKF+   L  NVA    L+I  V    +G    PL+ V++LW+ ++     A+ L  E     LM R P
Sbjct:  768 ANVGIAMGINGSDVSKEASDIVLSDDNFASILNAVEEGRRMTDNIQKFVLQLLAENVAQALYLIIGLVFRDENGKSVFPLSPVEVLWIIVVTSCFPAMGLGLEKAAPDLMDRPP 881          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATN2_YEAST (Sodium transport ATPase 2 OS=Saccharomyces cerevisiae GN=ENA2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAA---LVINFVAAVSSGD--VPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSP 562
            A++G+AMGI G++V+KE+SDI++ DDNFAS++  V  GR +  NIQKF+   L  NVA    L+I  V    +G    PL+ V++LW+ ++     A+ L  E     LM R P
Sbjct:  768 ANVGIAMGINGSDVSKEASDIVLSDDNFASILNAVEEGRRMTDNIQKFVLQLLAENVAQALYLIIGLVFRDENGKSVFPLSPVEVLWIIVVTSCFPAMGLGLEKAAPDLMDRPP 881          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATN1_YEAST (Sodium transport ATPase 1 OS=Saccharomyces cerevisiae GN=ENA1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 47/114 (41.23%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  236 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAA---LVINFVAAVSSGD--VPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSP 562
            A++G+AMGI G++V+KE+SDI++ DDNFAS++  V  GR +  NIQKF+   L  NVA    L+I  V    +G    PL+ V++LW+ ++     A+ L  E     LM R P
Sbjct:  768 ANVGIAMGINGSDVSKEASDIVLSDDNFASILNAVEEGRRMTDNIQKFVLQLLAENVAQALYLIIGLVFRDENGKSVFPLSPVEVLWIIVVTSCFPAMGLGLEKAAPDLMDRPP 881          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATP4A_RABIT (Potassium-transporting ATPase alpha chain 1 OS=Oryctolagus cuniculus GN=ATP4A PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +M   P   +   + N
Sbjct:  738 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 857          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATP4A_PIG (Potassium-transporting ATPase alpha chain 1 OS=Sus scrofa GN=ATP4A PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +M   P   +   + N
Sbjct:  737 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 856          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATP4A_MOUSE (Potassium-transporting ATPase alpha chain 1 OS=Mus musculus GN=Atp4a PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +M   P   +   + N
Sbjct:  736 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 855          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATP4A_HUMAN (Potassium-transporting ATPase alpha chain 1 OS=Homo sapiens GN=ATP4A PE=2 SV=5)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +M   P   +   + N
Sbjct:  738 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 857          
BLAST of FC929561 vs. ExPASy Swiss-Prot
Match: ATP4A_CANFA (Potassium-transporting ATPase alpha chain 1 OS=Canis familiaris GN=ATP4A PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +M   P   +   + N
Sbjct:  737 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 856          
The following BLAST results are available for this feature:
BLAST of FC929561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
ATNA_DROME4.291e-1635.04Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A_HYDAT4.291e-1634.31Sodium/potassium-transporting ATPase subunit alpha... [more]
ATN5_YEAST7.320e-1641.23Sodium transport ATPase 5 OS=Saccharomyces cerevis... [more]
ATN2_YEAST7.320e-1641.23Sodium transport ATPase 2 OS=Saccharomyces cerevis... [more]
ATN1_YEAST7.320e-1641.23Sodium transport ATPase 1 OS=Saccharomyces cerevis... [more]
ATP4A_RABIT9.560e-1635.83Potassium-transporting ATPase alpha chain 1 OS=Ory... [more]
ATP4A_PIG9.560e-1635.83Potassium-transporting ATPase alpha chain 1 OS=Sus... [more]
ATP4A_MOUSE9.560e-1635.83Potassium-transporting ATPase alpha chain 1 OS=Mus... [more]
ATP4A_HUMAN9.560e-1635.83Potassium-transporting ATPase alpha chain 1 OS=Hom... [more]
ATP4A_CANFA9.560e-1635.83Potassium-transporting ATPase alpha chain 1 OS=Can... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1AD12RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1AD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929561 ID=FC929561; Name=FC929561; organism=Citrus clementina; type=EST; length=871bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCAGGGAATACAATAATTTGTTAAGTTGAGCTTC
TGTTTTGTGTAGTTTCGAGGGCAGCTTGATGCTGCTAGCATTGTCACTGC
TAGAAGTGTTTTTTTTACCGG
back to top