FC929564

Overview
NameFC929564
Unique NameFC929564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929564_ssr12 microsatellite FC929564_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14184 contig Ccv1_Contig14184:128..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC929564 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  203 WCVCKDGVGDPVLQKALDYACG-AGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 448
            WCV K+   D  LQ A+++ACG  GADC PI   GPC +P  V+   S+  N+Y+ + G+   +C+F+ +A + + +PS   C
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTC 123
[Close]
BLAST of FC929564 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.267e-12
Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 2 
Query:  191 STANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 448
            S+ +WC+      +  L+ ALD+ACG G  DC  I  + PC+ P+T+ +H S+  NSYFQ+      +C F G+      DPS   C
Sbjct:  365 SSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKC 451
The following BLAST results are available for this feature:
BLAST of FC929564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L1_ARATH7.048e-1438.55Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH2.267e-1236.78Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DB04RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929564 ID=FC929564; Name=FC929564; organism=Citrus clementina; type=EST; length=887bp
GAACTTTTTCATCTCTCTCTCAGTCCCTCTCAAAGGCCTCAGCTTAGCTG
CTGTGTGTGTTGTGACAAACTTTTCTCGGAGCCAAACAAGCAAGTATTTG
TTATTATTATCTCTTCTCTAAGCTTCTTTTGCTCATTCAGTGATGGCTGT
TTTGGTGCTTTTAGCTCTCTTCCTTGGCTTCACTGGGCATTCAACTGCAA
ACTGGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTACAAAAAGCT
TTGGACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTATCCATTCCAA
TGGGCCTTGTTACAACCCCAACACTGTCAAAGCTCACTGCAGTTATGCTG
TCAACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAGGCTCTTGTGATTTT
TCCGGAAGTGCAACCGTTGCCACTACCGATCCCAGCACTGCTGGCTGTTC
TTATCCTTCAAGTGCCAGCACTTCAGGCACCACCTCAACAACACCAGTCA
CAGGTACTCCAGGCACAACCACACCCACAACAACTCCGTCCACTACCACT
CCAACGACTAACACACCAGGCAGCACCACACCAGGCAGCACCACTCCGGG
CAGCACCACTCCGTACACCACCACACCATCAACTGGAACTGGAGTGTTGG
GAGGAGTTGGTCCTGGTTTAGGCCCTTCGGGATCTGGTATGCCCAACACA
GACTATAGTCATGGTGGGATGAGACTGCAAAACTCTGCCTTGTCTTTTTT
GGTCGTCCTCTTGTTCTCAGGCTCGATGCTCTTGTGGGGTTGAAAGAAAC
AATCAACATGACATCTACTAGGATGGAGATGTGGTACTATAGTCAGTGTC
CTTGATGCTGGATCTCAATGTGCAAAAATGGAGTATG
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