FC929569

Overview
NameFC929569
Unique NameFC929569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length900
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9278 contig Ccv1_Contig9278:3..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929569 vs. ExPASy Swiss-Prot
Match: CALSA_ARATH (Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 6.254e-42
Identity = 81/186 (43.55%), Postives = 120/186 (64.52%), Query Frame = 2
Query:   65 RGIIAEIVLALRFFIYQYGLVYHLKMTKHTKSFLVYGVSWLVIFLVLFVMKTVSVGRRKFSANFQLVFRLIKGLIFLTFISILVTLIALPHMTVRDIIVCILAFMPTGWGMLLIAQALKPVIHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQR 622
            RG I E +L+LRFF++QYG+VY L +T+   S  +YG SW+V+ +++F                     L KG+  +TFI+++V  IA+  +++ D+  C+L F+PTGW +L +A   K V+   G W +VR   R Y+  MG+L+F+P+A L+WFPF+S FQ+R+LFNQAFSRGL+IS IL G R
Sbjct: 1740 RGRILETILSLRFFMFQYGIVYKLDLTRKNTSLALYGYSWVVLVVIVF---------------------LFKGVASITFIALIVVAIAMTDLSIPDMFACVLGFIPTGWALLSLAITWKQVLRVLGLWETVREFGRIYDAAMGMLIFSPIALLSWFPFISTFQSRLLFNQAFSRGLEISIILAGNR 1904          
BLAST of FC929569 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.482e-40
Identity = 78/193 (40.41%), Postives = 126/193 (65.28%), Query Frame = 2
Query:   44 HLQHSGKRGIIAEIVLALRFFIYQYGLVYHLKMTKHTKSFLVYGVSWLVIFLVLFVMKTVSVGRRKFSANFQLVFRLIKGLIFLTFISILVTLIALPHMTVRDIIVCILAFMPTGWGMLLIAQALKPVIHRAGFWGSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQR 622
            HL+ +G  G + EI+L LRFF +QY +VYHL++ ++  S  VY +SW  I  ++ +  T    ++++S    + +R I+ L+ L  + ++V ++    +TV D+++ +LAF+PTGWG++ IAQ LKP +     W +V ++AR Y++  GL++  PVA L+W P     QTR+LFN+AFSRGLQIS IL G++
Sbjct: 1574 HLKTTGVWGKLLEIILDLRFFFFQYSIVYHLRIAENRTSIGVYLISWGCIIGIVAIYITTIYAQKRYSVKEHIKYRFIQFLVILLTVLVVVMMLQFTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGKK 1766          
The following BLAST results are available for this feature:
BLAST of FC929569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSA_ARATH6.254e-4243.55Callose synthase 10 OS=Arabidopsis thaliana GN=CAL... [more]
CALSB_ARATH4.482e-4040.41Callose synthase 11 OS=Arabidopsis thaliana GN=CAL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DB09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929569 ID=FC929569; Name=FC929569; organism=Citrus clementina; type=EST; length=900bp
ACCTGAGAAAAGTTGGGAATCATGGTGGGAGGAAGAACAGGAGCATCTCC
AGCACTCTGGAAAGCGTGGTATCATAGCTGAGATAGTGTTAGCTTTAAGG
TTCTTTATCTATCAGTATGGACTCGTGTACCATTTGAAAATGACAAAGCA
CACTAAAAGTTTTCTGGTCTACGGTGTATCATGGCTGGTGATCTTTCTTG
TATTGTTTGTGATGAAGACTGTATCTGTTGGGCGGCGAAAGTTCAGTGCA
AATTTCCAACTCGTGTTCCGACTGATAAAGGGATTGATATTTTTGACTTT
CATCTCCATCCTGGTCACTTTGATTGCACTTCCACACATGACAGTGCGCG
ACATCATTGTGTGTATTCTCGCATTCATGCCCACTGGTTGGGGAATGCTT
TTGATTGCACAAGCTTTGAAGCCTGTTATTCACCGAGCTGGATTCTGGGG
ATCAGTTAGGACACTTGCTCGTGGCTACGAGATTGTTATGGGTTTGCTTC
TGTTCACCCCAGTTGCGTTCCTTGCTTGGTTTCCTTTTGTGTCAGAATTC
CAGACTCGTATGCTCTTCAACCAAGCATTCAGCAGAGGTCTACAGATCTC
TCGTATTCTTGGCGGGCAGCGGAAGGATCGTTCCTCTCGTAACAAGGAGT
AAAATGAGTGATAGCGAGAGCAGAATCTGTGGTAATTTGTTAATCACTCT
CGCATGTTTAAAGAGAGTTGTCCATAATTTATATTTGTATCCTCTGCGGT
TGTTGTAATCATGGATGACGTCTGGGGGCTGCATTTTTGGTAATTAATTT
GATTGTAAGTCCTGGCAGCCCATAGCTGTCATATTGATTGTATCAAAATT
ATGATTAGTAATTTTTATAATCTATTATCTTATTGAAATAAAAAAAAAAA
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