FC929584

Overview
NameFC929584
Unique NameFC929584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   82 SNRLQKELVEWQVNPPAGFK-HKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            S RL KEL+   +    G       +N+ +W+  + G   T+Y+ +T+ L +DFP  YP  AP V FL     HP++   G ICLDIL D WS    V ++ +SI S+L
Sbjct:   34 SKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSC-FHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLL 141          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  157 NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHI-YSNGHICLDILYDSWSPAMTVSSVCISILSMLS 408
            +L RW+  + G P T Y N  FEL +  P +YP++ P + F+     HP+I +  G ICLD+L  SWS   T+ SVC SI+++LS
Sbjct:   29 DLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKI-FHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLS 112          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 44/125 (35.20%), Postives = 65/125 (52.00%), Query Frame = 1
Query:   79 ASNRLQKELVEWQVNPPAGFKHKVTD--NLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            AS  LQK+L +   +P  GF   + D  N+  W + + G P TLY    F   + FP++YP   P V F      HP++YS+G +C+ IL+             + W+P  TV S+ +SI+SMLS
Sbjct:    5 ASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDM-WHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLS 128          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 1
Query:   85 NRLQKELVEWQVNPPAGFKHKV--TDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYS-NGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVK--QRPADNDRYVKN 459
            +R+QKEL + + N  +        +DNL R    + G  GT Y   TF++ +  P+ YP E P++ F      HP+I S +G ICLDIL D WSPA+T+ +  +SI ++LS+   K  Q     ++Y+KN
Sbjct:    5 SRIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKV-WHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKN 133          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.740e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  154 DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVKQRPADN--DRYVKNCRNGRSPKETRW 495
            DNL+ + + + G   + Y +  FEL++  P+ YPMEAP+V FL     HP+I   G ICLD+L  +WSPA+ + +V +SI ++L+S       A++  + ++KN   G   K   W
Sbjct:   30 DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI-YHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKN-EQGAKAKAREW 143          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVTDNLQRWI-IEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 411
            R+ KE       P  G K +  ++  R+  + + G   + +   TF+L++  PE YPM AP+V F+     HP++  +G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI-YHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSA 114          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            L+++L E   NP  GF   + D+  L RW + + G P TLY    F+  + FP+ YP+  P++ F+     HP++  NG +C+ IL+             + W P  TV ++ IS++SML+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI-WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 129          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            L+++L E   NP  GF   + D+  L RW + + G P TLY    F+  + FP+ YP+  P++ F+     HP++  NG +C+ IL+             + W P  TV ++ IS++SML+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI-WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 129          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD-------------SWSPAMTVSSVCISILSMLS 408
            L+++L E   NP  GF   + D+  L RW + + G P TLY    F+  + FP+ YP+  P++ F+     HP++  NG +C+ IL++              W P  TV ++ IS++SML+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI-WHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLA 129          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.352e-12
Identity = 39/121 (32.23%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   91 LQKELVEWQVNPPAGFKHKVTDN--LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLS 408
            L+++L E   NP  GF   + D+  L RW + + G P TLY    F+  + FP+ YP+  P++ F+     HP++  NG +C+ IL+             + W P  TV ++ IS++SML+
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI-WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 129          
The following BLAST results are available for this feature:
BLAST of FC929584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBE2C_DROME4.740e-1337.61Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBCX_DICDI4.740e-1342.35Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC7_ARATH4.740e-1335.20Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC27_ARATH4.740e-1336.92Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC13_YEAST4.740e-1336.21Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2N_MACFA2.352e-1235.78Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UB2G1_RAT2.352e-1232.23Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE2.352e-1232.23Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA2.352e-1232.23Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN2.352e-1232.23Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929584 ID=FC929584; Name=FC929584; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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