FC929584

Overview
NameFC929584
Unique NameFC929584
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9525 contig Ccv1_Contig9525:24..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGFKHKVTDN------LQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF    T N      L  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 46/142 (32.39%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   67 LSKIASNRLQKELVEWQVNPPAGF------KHKVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYD--SWSPAMTVSSVCISILSMLSSSTVKQRPADNDRYVKNCRN 468
            +S IA +RL +E   W+ + P GF          T NL  W   + G  GT +    F+L++ F + YP   P+  F PP   HP++Y +G +CL IL +   W PA+T+  + + I  +L+   + Q PA  + Y   C+N
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL-FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNI-QDPAQAEAYTIYCQN 140          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   88 RLQKELVEWQVNPPAGFKHKVT-DNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            RL ++  + Q +PPAG     T DN+  W   + G   T + + TF+L ++F E YP + P V F+     HP++Y++G ICLDIL + WSP   V+++  SI S+L
Sbjct:    8 RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKM-FHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 113          
BLAST of FC929584 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.287e-14
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   76 IASNRLQKELVEWQVNPPAGFKH-KVTDNLQRWIIEVNGAPGTLYANETFELQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSML 405
            +A  R+ KEL +   +PPA      V D++  W   + G   + Y    F L + FP  YP + P+V F      HP+I SNG ICLDIL   WSPA+T+S V +SI S+L
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI-YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110          
The following BLAST results are available for this feature:
BLAST of FC929584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
UBC9_XENLA4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK4.287e-1432.39SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE4.287e-1432.39SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC9A_DANRE4.287e-1432.39SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC1_CAEEL4.287e-1438.32Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UB2D2_XENLA4.287e-1440.54Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DC03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929584 ID=FC929584; Name=FC929584; organism=Citrus clementina; type=EST; length=767bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGTTCATCTGC
TCCTTCACGCAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCTTCAAGTGGATTTCCCTGAGCATT
ACCCTATGGAGGCACCTCAAGTGATTTTTCTCCCTCCAGCTCCTCTGCAT
CCCCACATTTATAGCAATGGACATATCTGTTTAGATATTCTTTATGATTC
CTGGTCCCCGGCAATGACTGTTAGTTCTGTATGTATCAGCATTCTCTCCA
TGTTGTCAAGCTCAACTGTGAAGCAACGGCCCGCCGATAACGACCGTTAT
GTGAAGAACTGTAGGAATGGGAGATCTCCAAAGGAGACAAGATGGTGGTT
CCATGATGATAAAGTGTAATGATAGAAGAAGTATCAATTAGCTGTAACCT
GTGTATAAAATGGAGGGTTTTGGGAAAGATTCGTGGAAGGCATCTGGAAA
GGGGGCTGCCATTGCTATGCCTATAAAAACCTGTCCACTGTTTTTTATGT
TTTCACTTGCTCTGTACTCGGGATGATTTTATATTTTGGTTGTACTGCCC
TCCCGTAACAGGTTTCATAATTTCAATGATATCCTAATTATCAATAGGAA
CAAAAAAAAAAAAAAAA
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