FC929604

Overview
NameFC929604
Unique NameFC929604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14818 contig Ccv1_Contig14818:22..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: ECS1_ARTAN (Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 64/230 (27.83%), Postives = 110/230 (47.83%), Query Frame = 3
Query:  168 QTIIRRSADYGPTIWSFDYIQSLDSKYKG-ESYARQL-EKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNKSLYA-TALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            + +IR +A++   IW   ++     + +G E   + L E++K ++   L    +  +L     L  ID + RLG++Y+FE+EI +    ++    +K     T+L FR++RQ+G+     + FS + D++G FK S   D   G+                I  DA+ FT   L E +AK+    N    + + ++ AL  PLH R+ RLEA  +I  Y+     +  LL
Sbjct:    6 EDVIRPNANFPSEIWGDQFLAYDQDEQEGVEQVIKDLKEEVKSELLTALNSPTQHTEL-----LKFIDAIERLGIAYYFEEEINQVFQHMYTAYGDKWTGGNTSLWFRLMRQHGFFVS-SDIFSTYKDKEGRFKESLEKD-VHGL-LELYEAAYMFVPGEGILDDALVFTRTCLDE-IAKNPSLSN--SAVSSQIREALTQPLHKRLPRLEALRYIPFYQQQASHSETLL 224          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: AMS1_ARTAN (Amorpha-4,11-diene synthase OS=Artemisia annua GN=AMS1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 69/239 (28.87%), Postives = 114/239 (47.70%), Query Frame = 3
Query:  141 STTSIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQ--LDLIDNLHRLGVSYHFEDEIKRTLDRIHNK-NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            S T  KP     IR  A++ P+IW   ++  +  K   +   + +  LK++V  +L++    +D+   H   L LID + RLG+ YHFE EI   L  I+     N +   ++L FR++R+ GY     + F+ + D+ G+FK  S +++ +G+                I  DA+ FT + L   + K     N    L T ++ AL+ PL  R+ R+EA  +I  Y+     N  LL
Sbjct:    2 SLTEEKP-----IRPIANFPPSIWGDQFL--IYEKQVEQGVEQIVNDLKKEVRQLLKE---ALDIPMKHANLLKLIDEIQRLGIPYHFEREIDHALQCIYETYGDNWNGDRSSLWFRLMRKQGYYVTC-DVFNNYKDKNGAFK-QSLANDVEGL-LELYEATSMRVPGEIILEDALGFTRSRL-SIMTKDAFSTN--PALFTEIQRALKQPLWKRLPRIEAAQYIPFYQQQDSHNKTLL 224          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: GBIS2_ARATH ((Z)-gamma-bisabolene synthase 2 OS=Arabidopsis thaliana GN=TPS13 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 53/203 (26.11%), Postives = 97/203 (47.78%), Query Frame = 3
Query:  255 ESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNK-----NTNKSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILL 848
            ++  R+++ +K +V  +L   +K  D     ++ LI +L  LG+++HFE+EIK  L+    +          L   ++ FR+ R YG+N P    F RF  + G F+ S  +++ KG+                I  +A+ FT+++L   +    +      ++  L+++ L LP  W M  + AR +I  YE   D + +LL
Sbjct:   37 DAITREIDIIKPEVRKLLS--SKGDDETSKRKVLLIQSLLSLGLAFHFENEIKDILEDAFRRIDDITGDENDLSTISIMFRVFRTYGHNLP-SSVFKRFTGDDGKFERSL-TEDAKGILSLYEAAHLGTTT-DYILDEALEFTSSHLKSLL----VGGMCRPHILRLIRNTLYLPQRWNMEAVIAREYISFYEQEEDHDKMLL 230          
BLAST of FC929604 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 59/229 (25.76%), Postives = 100/229 (43.67%), Query Frame = 3
Query:  195 YGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDNKVVDLDPLHQLDLIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN-----------KSLYATALKFRILRQYGYNTPVKESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLXEWVAKHDIDKNDDEYLCTL-----VKHALELPLHWRMRRLEARWFIDVYESGPDM 833
            + P+  +F ++Q+ DS          LE L+  V         V  +D    + ++D L RLG+S +FE+EIK  LD +H   T+           + +  TA+ FR+LRQ+GY     + F  F  E   F     S++                    I ++A  F+  YL E   K + ++  D+++        +  ALE+P +  + R+E R++ID Y    D+
Sbjct:  288 FSPSSTAFAFMQTRDSNC--------LEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSA-DVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLE---KREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDV 504          
The following BLAST results are available for this feature:
BLAST of FC929604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ECS1_ARTAN2.746e-1227.83Epi-cedrol synthase OS=Artemisia annua GN=ECS1 PE=... [more]
AMS1_ARTAN2.746e-1228.87Amorpha-4,11-diene synthase OS=Artemisia annua GN=... [more]
GBIS2_ARATH3.965e-1126.11(Z)-gamma-bisabolene synthase 2 OS=Arabidopsis tha... [more]
KSA_ARATH5.179e-1125.76Ent-copalyl diphosphate synthase, chloroplastic OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DD01RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH2DD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929604 ID=FC929604; Name=FC929604; organism=Citrus clementina; type=EST; length=849bp
TTATATTCTAAGTCATGGCTCTTAATCTGCTATCTTCACTACCTGCGGTA
TGCAATTTCACCAGATTATCATTACCATTATCAAGCAAAGTTAATGGCTT
TGTTCCTCCTATTACTCGAGTCCAATATCCCATGGCTGCATCCACTACTT
CTATTAAGCCTGTCGATCAAACCATTATTAGGCGATCTGCCGATTACGGG
CCAACCATTTGGAGTTTTGATTATATTCAATCACTTGACAGTAAATATAA
GGGAGAATCGTATGCCAGACAATTGGAAAAGCTGAAGGAACAAGTAAGCG
CGATGCTACAGCAGGATAATAAAGTGGTGGATTTGGATCCTTTACATCAA
CTTGACCTCATCGATAATCTGCACAGACTTGGAGTATCTTATCACTTTGA
GGATGAAATAAAAAGAACTTTGGATAGGATACACAACAAGAATACTAATA
AAAGTTTATATGCCACAGCACTCAAATTTAGAATCCTAAGGCAATATGGT
TACAATACACCTGTAAAAGAAAGTTTTTCACGTTTCATGGATGAGAAGGG
GAGCTTTAAGTTATCAAGCCACAGTGACGAATGCAAAGGAATGTTAGCTC
TGTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCAGTATCTTTCGT
GACGCTATAAGGTTCACCACCGCATATCTCANAGAATGGGTGGCCAAGCA
TGATATTGACAAAAATGATGATGAATATCTTTGTACATTAGTGAAACATG
CTTTGGAACTTCCACTACATTGGAGGATGCGAAGATTGGAGGCAAGGTGG
TTCATCGATGTATACGAAAGTGGACCAGACATGAACCCTATCTTGCTCG
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